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Marker Overview
Name | BNL3031 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL1672_orig=BNL3031_orig
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Source Type | genomic |
Repeat Motif | (AG)27 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL3031_F: AGGCTGACCCTTTAAGGAGC |
Primer 2 | BNL3031_R: AACCAACTTTTCCAACACCG |
Polymorphism | P_ BNL3031 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | (SM3 x SM12) x (X4133 x 8891), 4WC (2008) | AD_ch23_Dt.09 | N/A | 22.4 | BNL3031 | View |
2 | 7235 x TM-1, RIL (2007) | AD_ch09_At.09 | N/A | 1.4 | BNL3031 | View |
3 | Emian-22 x 3-79, BC1 (2011) | AD_ch09_At.09 | N/A | 70.53 | BNL3031 | View |
4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch09_At.09 | N/A | 50.51 | BNL3031 | View |
5 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch23_Dt.09 | N/A | 38.53 | BNL3031 | View |
6 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch09_At.09 | N/A | 36.98 | BNL3031 | View |
7 | AD-genome wide Reference Map (2009) | AD_ch23_Dt.09 | N/A | 100 | BNL3031 | View |
8 | AD-genome wide Reference Map (2009) | AD_ch09_At.09 | N/A | 123 | BNL3031 | View |
9 | TM-1 x 3-79, RIL (2006) | AD_ch23_Dt.09 | N/A | 43.4 | BNL3031 | View |
10 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch09_At.09 | N/A | 130.7 | BNL3031 | View |
11 | Zhongmiansuo-12 x 8891, RIL (2007) | AD_ch23_Dt.09 | N/A | 0.5 | BNL3031 | View |
12 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch23_Dt.09 | N/A | 57.28 | BNL3031 | View |
13 | AD-genome wide Reference Map (2009) | AD_ch26_Dt.12 | N/A | 37 | BNL3031 | View |
14 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch09_At.09 | N/A | 4.8 | BNL3031 | View |
15 | 7235 x TM-1, F2:3 (2005) | AD_ch09_At.09 | N/A | 0 | BNL3031 | View |
16 | HS427-10 x TM-1, F2:3 (2005) | AD_ch09_At.09 | N/A | 63 | BNL3031 | View |
17 | 60182 x Jun Mian 1, F2:3 (2007) | AD_ch23_Dt.09 | N/A | 31.1 | BNL3031 | View |
18 | Yumian-1 x 7235, RIL (2015) | AD_ch09_At.09 | N/A | 68 | BNL3031 | View |
19 | TM-1 x (TX-0256 + TX-1046), CSIL (2016) | AD_ch23_Dt.09 | N/A | 58.5 | BNL3031 | View |
20 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch09_At.09 | N/A | 63.9 | BNL3031 | View |
21 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch23_Dt.09 | N/A | 68.1 | BNL3031 | View |
22 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch09_At.09 | N/A | 128.8 | BNL3031b | View |
23 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch09_At.09 | N/A | 118 | BNL3031b | View |
24 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch23_Dt.09 | N/A | 58.9 | BNL3031b | View |
25 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch09_At.09 | N/A | 56.8 | BNL3031b | View |
26 | Palmeri x K-101, F2 (2007) | AD_ch09_At.09 | N/A | 46.1 | BNL3031b | View |
27 | TM-1 x 3-79, RIL (2012) | AD_ch23_Dt.09 | N/A | 92.69 | BNL3031b | View |
28 | TM-1 x 3-79, RIL (2014) | AD_ch23_Dt.09 | N/A | 51 | BNL3031b | View |
29 | Monsanto SSR Bin Map, (2009) | AD_ch23_Dt.09 | N/A | 81 | BNL3031b | View |
30 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch23_Dt.09 | N/A | 111.7 | BNL3031a | View |
31 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch23_Dt.09 | N/A | 117.7 | BNL3031a | View |
32 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch09_At.09 | N/A | 78.2 | BNL3031a | View |
33 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch23_Dt.09 | N/A | 71.3 | BNL3031a | View |
34 | Palmeri x K-101, F2 (2007) | AD_ch09_At.09 | N/A | 42.5 | BNL3031a | View |
35 | TM-1 x 3-79, RIL (2012) | AD_ch09_At.09 | N/A | 90.52 | BNL3031a | View |
36 | TM-1 x 3-79, RIL (2014) | AD_ch09_At.09 | N/A | 50.4 | BNL3031a | View |
37 | Monsanto SSR Bin Map, (2009) | AD_ch09_At.09 | N/A | 81 | BNL3031a | View |
38 | HS-46 x MARCABUCAG8US-1-88, RIL (2009) | AD_ch09_At.09 | N/A | 146 | BNL3031-158 | View |
39 | Palmeri x K-101, F2 (2007) | AD_ch23_Dt.09 | N/A | 88.1 | BNL3031c | View |
40 | TM-1 x Hai-7124, BC1 (2007) | AD_ch09_At.09 | N/A | 60.5 | BNL3031-155 | View |
41 | TM-1 x Hai-7124, BC1 (2008) | AD_ch09_At.09 | N/A | 60.8 | BNL3031-155 | View |
42 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch09_At.09 | N/A | 48.7 | BNL3031-155 | View |
43 | TM-1 x Hai-7124, BC1 (2012) | AD_ch09_At.09 | N/A | 60.9 | BNL3031-155 | View |
44 | TM-1 x Hai-7124, BC1 (2007) | AD_ch23_Dt.09 | N/A | 70.1 | BNL3031-190 | View |
45 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch26_Dt.12 | N/A | 146.1 | BNL3031-190 | View |
46 | TM-1 x Hai-7124, BC1 (2008) | AD_ch23_Dt.09 | N/A | 69.74 | BNL3031-190 | View |
47 | TM-1 x Hai-7124, BC1 (2012) | AD_ch23_Dt.09 | N/A | 67.1 | BNL3031-190 | View |
48 | TM-1 x Hai-7124, BC1S1 (2007) | AD_ch23_Dt.09 | N/A | 73.5 | BNL3031_190 | View |
49 | TM-1 x 3-79, RIL (2012.v3) | AD_ch09_At.09 | N/A | 50.36 | BNL3031a | View |
50 | TM-1 x 3-79, RIL (2012.v3) | AD_ch23_Dt.09 | N/A | 50.99 | BNL3031b | View |
51 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch09_At.09 | N/A | 71.2 | BNL3031b | View |
52 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch23_Dt.09 | N/A | 84.3 | BNL3031a | View |
Sequence
>BNL3031 ID=BNL3031; Name=BNL3031; organism=Gossypium hirsutum; type=genetic_marker; length=185bp AGGCTGACCCTTTAAGGAGCAACCTAAAGGGGTTGTTCAAAGTATTTTTT GGATTTGTCCCTCTGTGTGTATAAAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGACTTTATTAGTAAAATTGTAAT GATCCAATTTTCTGTCGGTGTTGGAAAAGTTGGTT
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