BNL3031, BNL3031 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3031
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1672_orig=BNL3031_orig
Source Typegenomic
Repeat Motif(AG)27
PCR ConditionAnnealing temperature: 55
Primer 1BNL3031_F: AGGCTGACCCTTTAAGGAGC
Primer 2BNL3031_R: AACCAACTTTTCCAACACCG
PolymorphismP_ BNL3031
CommentPrimer data obtained in 2000
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1672_orig=BNL3031_origBNL1672_orig=BNL3031_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch23_Dt.09N/A22.4BNL3031View
27235 x TM-1, RIL (2007)AD_ch09_At.09N/A1.4BNL3031View
3Emian-22 x 3-79, BC1 (2011)AD_ch09_At.09N/A70.53BNL3031View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch09_At.09N/A50.51BNL3031View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch23_Dt.09N/A38.53BNL3031View
6Guazuncho-2 x VH8-4602, RIL (2009)AD_ch09_At.09N/A36.98BNL3031View
7AD-genome wide Reference Map (2009)AD_ch23_Dt.09N/A100BNL3031View
8AD-genome wide Reference Map (2009)AD_ch09_At.09N/A123BNL3031View
9TM-1 x 3-79, RIL (2006)AD_ch23_Dt.09N/A43.4BNL3031View
10Xinluzao-1 x Hai-7124, F2 (2008)AD_ch09_At.09N/A130.7BNL3031View
11Zhongmiansuo-12 x 8891, RIL (2007)AD_ch23_Dt.09N/A0.5BNL3031View
12Guazuncho-2 x VH8-4602, consensus (2009)AD_ch23_Dt.09N/A57.28BNL3031View
13AD-genome wide Reference Map (2009)AD_ch26_Dt.12N/A37BNL3031View
14(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch09_At.09N/A4.8BNL3031View
157235 x TM-1, F2:3 (2005)AD_ch09_At.09N/A0BNL3031View
16HS427-10 x TM-1, F2:3 (2005)AD_ch09_At.09N/A63BNL3031View
1760182 x Jun Mian 1, F2:3 (2007)AD_ch23_Dt.09N/A31.1BNL3031View
18Yumian-1 x 7235, RIL (2015)AD_ch09_At.09N/A68BNL3031View
19TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch23_Dt.09N/A58.5BNL3031View
20CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch09_At.09N/A63.9BNL3031View
21CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch23_Dt.09N/A68.1BNL3031View
22CCRI-36 x Hai-7124, F2 (2007)AD_ch09_At.09N/A128.8BNL3031bView
23Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch09_At.09N/A118BNL3031bView
24Guazuncho-2 x VH8-4602, BC2 (2005)AD_ch23_Dt.09N/A58.9BNL3031bView
25Handan-208 x Pima-90, F2:3 (2007)AD_ch09_At.09N/A56.8BNL3031bView
26Palmeri x K-101, F2 (2007)AD_ch09_At.09N/A46.1BNL3031bView
27TM-1 x 3-79, RIL (2012)AD_ch23_Dt.09N/A92.69BNL3031bView
28TM-1 x 3-79, RIL (2014)AD_ch23_Dt.09N/A51BNL3031bView
29Monsanto SSR Bin Map, (2009)AD_ch23_Dt.09N/A81BNL3031bView
30CCRI-36 x Hai-7124, F2 (2007)AD_ch23_Dt.09N/A111.7BNL3031aView
31Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch23_Dt.09N/A117.7BNL3031aView
32Guazuncho-2 x VH8-4602, BC2 (2005)AD_ch09_At.09N/A78.2BNL3031aView
33Handan-208 x Pima-90, F2:3 (2007)AD_ch23_Dt.09N/A71.3BNL3031aView
34Palmeri x K-101, F2 (2007)AD_ch09_At.09N/A42.5BNL3031aView
35TM-1 x 3-79, RIL (2012)AD_ch09_At.09N/A90.52BNL3031aView
36TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A50.4BNL3031aView
37Monsanto SSR Bin Map, (2009)AD_ch09_At.09N/A81BNL3031aView
38HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch09_At.09N/A146BNL3031-158View
39Palmeri x K-101, F2 (2007)AD_ch23_Dt.09N/A88.1BNL3031cView
40TM-1 x Hai-7124, BC1 (2007)AD_ch09_At.09N/A60.5BNL3031-155View
41TM-1 x Hai-7124, BC1 (2008)AD_ch09_At.09N/A60.8BNL3031-155View
42Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch09_At.09N/A48.7BNL3031-155View
43TM-1 x Hai-7124, BC1 (2012)AD_ch09_At.09N/A60.9BNL3031-155View
44TM-1 x Hai-7124, BC1 (2007)AD_ch23_Dt.09N/A70.1BNL3031-190View
45Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch26_Dt.12N/A146.1BNL3031-190View
46TM-1 x Hai-7124, BC1 (2008)AD_ch23_Dt.09N/A69.74BNL3031-190View
47TM-1 x Hai-7124, BC1 (2012)AD_ch23_Dt.09N/A67.1BNL3031-190View
48TM-1 x Hai-7124, BC1S1 (2007)AD_ch23_Dt.09N/A73.5BNL3031_190View
49TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A50.36BNL3031aView
50TM-1 x 3-79, RIL (2012.v3)AD_ch23_Dt.09N/A50.99BNL3031bView
51PD 94042 x (AD)4-08, F2 (2016)AD_ch09_At.09N/A71.2BNL3031bView
52PD 94042 x (AD)4-08, F2 (2016)AD_ch23_Dt.09N/A84.3BNL3031aView
Sequence
>BNL3031 ID=BNL3031; Name=BNL3031; organism=Gossypium hirsutum; type=genetic_marker; length=185bp
AGGCTGACCCTTTAAGGAGCAACCTAAAGGGGTTGTTCAAAGTATTTTTT
GGATTTGTCCCTCTGTGTGTATAAAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGACTTTATTAGTAAAATTGTAAT
GATCCAATTTTCTGTCGGTGTTGGAAAAGTTGGTT