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Marker Overview
| Name | BNL3411 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL3411_orig
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| Source Type | genomic |
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| Repeat Motif | (CA)9+(CT)11+(CA)6 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL3411_F: TTTTACACTCTCTCTCCTGTCTCC |
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| Primer 2 | BNL3411_R: GTTTCCATTTGCGATGAGCT |
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| Polymorphism | P_ BNL3411 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch11_At.11 | N/A | 64.1 | BNL3411 | View |
| 2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch11_At.11 | N/A | 166.6 | BNL3411 | View |
| 3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch11_At.11 | N/A | 156.03 | BNL3411 | View |
| 4 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch11_At.11 | N/A | 69.2 | BNL3411 | View |
| 5 | AD-genome wide Reference Map (2009) | AD_ch11_At.11 | N/A | 219 | BNL3411 | View |
| 6 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch11_At.11 | N/A | 14.6 | BNL3411 | View |
| 7 | Palmeri x K-101, F2 (2007) | AD_ch11_At.11 | N/A | 143.1 | BNL3411 | View |
| 8 | Monsanto SSR Bin Map, (2009) | AD_ch11_At.11 | N/A | 41 | BNL3411 | View |
| 9 | TM-1 x Hai-7124, BC1 (2007) | AD_ch11_At.11 | N/A | 112.5 | BNL3411-200 | View |
| 10 | TM-1 x Hai-7124, BC1 (2008) | AD_ch11_At.11 | N/A | 113.05 | BNL3411-200 | View |
| 11 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch11_At.11 | N/A | 121.1 | BNL3411-200 | View |
| 12 | TM-1 x Hai-7124, BC1 (2005.v0) | AD_ch11_At.11 | N/A | 258 | BNL3411-200 | View |
| 13 | TM-1 x Hai-7124, BC1 (2012) | AD_ch11_At.11 | N/A | 49.5 | BNL3411-200 | View |
Sequence
>BNL3411 ID=BNL3411; Name=BNL3411; organism=Gossypium hirsutum; type=genetic_marker; length=212bp
TTTTACACTCTCTCTCCTGTCTCCCCACACACACACACACACACTCTCTC
TCTCTCTCTCTCTCTCACACACACACACCATAGCTTAAGTTTCTGGCTAC
TGATATATATCAAAATATTCATGGTCATGGTTTATGGCTTCTGCCAAGGC
AAGGGTCGTGAGAAGAGTGAATCTCCTGTCGTCTTGTGGGGGAGCTCATC
GCAAATGGAAAC
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