|
Marker Overview
Name | BNL1161 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL1161_orig
|
Source Type | genomic |
Repeat Motif | (AG)24 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL1161_F: CATCTCCTCTGGAAAGAGCG |
Primer 2 | BNL1161_R: ATGAAGCAGCACATTCCATG |
Polymorphism | P_ BNL1161 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Emian-22 x 3-79, BC1 (2011) | AD_ch10_At.10 | N/A | 84.56 | BNL1161 | View |
2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch23_Dt.09 | N/A | 21.28 | BNL1161 | View |
3 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch10_At.10 | N/A | 26.55 | BNL1161 | View |
4 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch23_Dt.09 | N/A | 11.85 | BNL1161 | View |
5 | AD-genome wide Reference Map (2009) | AD_ch23_Dt.09 | N/A | 38 | BNL1161 | View |
6 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch10_At.10 | N/A | 86.7 | BNL1161 | View |
7 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch10_At.10 | N/A | 86.21 | BNL1161 | View |
8 | Palmeri x K-101, F2 (2007) | AD_ch10_At.10 | N/A | 111.2 | BNL1161 | View |
9 | AD-genome wide Reference Map (2009) | AD_ch10_At.10 | N/A | 163 | BNL1161 | View |
10 | Yumian-1 x T586, RIL (2015) | AD_ch09_At.09 | N/A | 16.8 | BNL1161 | View |
11 | Yumian-1 x 7235, RIL (2015) | AD_ch09_At.09 | N/A | 28 | BNL1161 | View |
12 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch10_At.10 | N/A | 75 | BNL1161 | View |
13 | SG 747 x Giza 75, BIL (2013) | AD_ch10_At.10 | N/A | 40.1 | BNL1161 | View |
14 | Monsanto SSR Bin Map, (2009) | AD_ch10_At.10 | N/A | 61 | BNL1161 | View |
15 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch10_At.10 | N/A | 97.4 | BNL1161b | View |
16 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch10_At.10 | N/A | 75.8 | BNL1161b | View |
17 | TM-1 x 3-79, RIL (2012) | AD_ch23_Dt.09 | N/A | 125.68 | BNL1161b | View |
18 | TM-1 x 3-79, RIL (2014) | AD_ch23_Dt.09 | N/A | 20.5 | BNL1161b | View |
19 | Monsanto SSR Bin Map, (2009) | AD_ch23_Dt.09 | N/A | 121 | BNL1161b | View |
20 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch23_Dt.09 | N/A | 76.5 | BNL1161a | View |
21 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch23_Dt.09 | N/A | 24.6 | BNL1161a | View |
22 | TM-1 x 3-79, RIL (2012) | AD_ch10_At.10 | N/A | 57.56 | BNL1161a | View |
23 | TM-1 x 3-79, RIL (2014) | AD_ch10_At.10 | N/A | 61.1 | BNL1161a | View |
24 | Monsanto SSR Bin Map, (2009) | AD_ch10_At.10 | N/A | 61 | BNL1161a | View |
25 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch10_At.10 | N/A | 156.5 | BNL1161b* | View |
26 | TM-1 x Hai-7124, BC1 (2007) | AD_ch10_At.10 | N/A | 50.6 | BNL1161-195 | View |
27 | TM-1 x Hai-7124, BC1 (2008) | AD_ch10_At.10 | N/A | 63.01 | BNL1161-195 | View |
28 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch10_At.10 | N/A | 124.2 | BNL1161-195 | View |
29 | TM-1 x Hai-7124, BC1 (2012) | AD_ch10_At.10 | N/A | 65.1 | BNL1161-195 | View |
30 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch09_At.09 | N/A | 5.7 | BNL1161(C9,C23,C10) | View |
31 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch23_Dt.09 | N/A | 5.7 | BNL1161(C9,C23,C10) | View |
32 | TM-1 x 3-79, RIL (2012.v3) | AD_ch10_At.10 | N/A | 61.07 | BNL1161a | View |
33 | TM-1 x 3-79, RIL (2012.v3) | AD_ch23_Dt.09 | N/A | 20.51 | BNL1161b | View |
34 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch10_At.10 | N/A | 94.4 | BNL1161 | View |
Sequence
>BNL1161 ID=BNL1161; Name=BNL1161; organism=Gossypium hirsutum; type=genetic_marker; length=219bp CATCTCCTCTGGAAAGAGCGCCGTACTTTACCTGGCTATCCATTCTAATT GGTGCTGCTTTGACCCCAAGTTTCTGTTTGAATCTCAGTACTTTCATTAT ATTCACTACATTAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGGAGAGTACTTGGGCAATTAAACTGGATAGATCATGC ATGGAATGTGCTGCTTCAT
|