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Marker Overview
| Name | BNL1665 |
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| Alias | MAS-L13
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL1665_orig
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| Source Type | genomic |
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| Repeat Motif | (AG)16 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL1665_F: CAGAACCAACATACTTTCTACGG |
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| Primer 2 | BNL1665_R: ATGTGCAAAAACTTGATGTGG |
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| Polymorphism | P_ BNL1665 |
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| Publication | [view all] |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | 3-79 x NM24016, RIL (2008) | AD_ch10_At.10 | N/A | 17.4 | BNL1665 | View |
| 2 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch10_At.10 | N/A | 25.1 | BNL1665 | View |
| 3 | Emian-22 x 3-79, BC1 (2011) | AD_ch10_At.10 | N/A | 112.5 | BNL1665 | View |
| 4 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch10_At.10 | N/A | 161.9 | BNL1665 | View |
| 5 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch10_At.10 | N/A | 25 | BNL1665 | View |
| 6 | AD-genome wide Reference Map (2009) | AD_ch10_At.10 | N/A | 81 | BNL1665 | View |
| 7 | TM-1 x 3-79, RIL (2006) | AD_ch10_At.10 | N/A | 66.9 | BNL1665 | View |
| 8 | TM-1 x 3-79, RIL (2012) | AD_ch10_At.10 | N/A | 74.31 | BNL1665 | View |
| 9 | Yumian-1 x 7235, RIL (2015) | AD_ch20_Dt.10 | N/A | 57.3 | BNL1665 | View |
| 10 | TM-1 x 3-79, RIL (2014) | AD_ch10_At.10 | N/A | 79 | BNL1665 | View |
| 11 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch10_At.10 | N/A | 98 | BNL1665 | View |
| 12 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch20_Dt.10 | N/A | 98.4 | BNL1665 | View |
| 13 | Monsanto SSR Bin Map, (2009) | AD_ch10_At.10 | N/A | 81 | BNL1665 | View |
| 14 | Deltapine x Giza-83, F2 (2008) | AD_chU | N/A | 313.7 | MAS-L13-70 | View |
| 15 | Deltapine x Giza-83, F2 (2008) | AD_chU | N/A | 154.5 | MAS-L13-50 | View |
| 16 | TM-1 x Hai-7124, BC1 (2007) | AD_ch10_At.10 | N/A | 46 | BNL1665-155 | View |
| 17 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch10_At.10 | N/A | 28.4 | BNL1665-155 | View |
| 18 | TM-1 x Hai-7124, BC1 (2008) | AD_ch10_At.10 | N/A | 58.17 | BNL1665-155 | View |
| 19 | TM-1 x Hai-7124, BC1 (2012) | AD_ch10_At.10 | N/A | 69.5 | BNL1665-155 | View |
| 20 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch10_At.10 | N/A | 34.4 | BNL1665(C10) | View |
| 21 | Yumian-1 x T586, F2:3 (2005.v0) | AD_ch20_Dt.10 | N/A | 34.4 | BNL1665(C10) | View |
| 22 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch20_Dt.10 | N/A | 66.34 | BNL1665 | View |
| 23 | TM-1 x 3-79, RIL (2012.v3) | AD_ch10_At.10 | N/A | 79.02 | BNL1665 | View |
Sequence
>BNL1665 ID=BNL1665; Name=BNL1665; organism=Gossypium hirsutum; type=genetic_marker; length=160bp
CAGAACCAACATACTTTCTACGGTAGAACAAGAATCCACATCAACATAAA
GAGAAGAATATATCACAGTGGAATATGCTTTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTGTCTCTCTCTCTCTTCTTACAAGATTCCACATCAAGT
TTTTGCACAT
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