TMB0307, TMB0307 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	TMB0307
Alias	TMA18 TMB0307=TMB0325 TMB0325 TMC10
Genbank ID	BV679873
Type	SSR
Species	Gossypium hirsutum
Germplasm	TM-1
Source Sequence	reverse_complement_BV679872.1
Source Type	genomic
Repeat Motif	(GA)23
PCR Condition	Annealing temperature: 55
Primer 1	TMB0307_F: GGAGCCTGGGTCTCTAGCTT
Primer 2	TMB0307_R: ACGGTGGTCTGGTGACTGA
Product Length	201
Contact	Yu, John Z. (Zhi-Hong)
Comment	Primer data obtained in 2005-10

Contact

Name

Details

Yu, John Z. (Zhi-Hong)

Description:	Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:	John
Last name:	Yu
Title:	Research Geneticist
Institution:	USDA-ARS
Address:	2765 F&B Road, College Station, Texas 77845
Country:	United States
Email:	zyu@qutun.tamu.edu
Phone:	1-979-260-9237
Fax:	1-979-260-9333
Keywords:	Cotton Molecular Genetics
Last update:	6-Sep-2007

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	BV679873

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A10	chromosome	A10:85849548..85849746 +
CM018211.1	chromosome	CM018211.1:84452333..84452519 +
Chr10_CRI-A2_v1.0.a1	chromosome	Chr10_CRI-A2_v1.0.a1:106012580..106012772 +
A10	chromosome	A10:76082252..76082448 +
Ghir_A10	chromosome	Ghir_A10:89810087..89810285 +
A10	chromosome	A10:91248402..91248600 +
A10	chromosome	A10:90009092..90009288 +
A10	chromosome	A10:85112147..85112343 +
scaffold15752	supercontig	scaffold15752:121678..122198 -
Gbar_A10	chromosome	Gbar_A10:84618097..84618283 +
A10	chromosome	A10:86378149..86378335 +
CM017619.1	chromosome	CM017619.1:85935029..85935205 +
CM017645.1	chromosome	CM017645.1:93440321..93440511 +
CM017697.1	chromosome	CM017697.1:87661281..87661471 +
A10	chromosome	A10:93002485..93002683 +
Chr10	chromosome	Chr10:56677678..56677872 +

Germplasm


Stock Name	Type
TM-1	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
reverse_complement_BV679872.1	reverse_complement_BV679872.1	Gossypium hirsutum	sequence_feature

Image


File Name	Legend
45_FISH_GEN-178-1117_fig2.jpg	BAC clones and their corresponding genetic markers of the 22 probes according to FISH signal patterns in Figure 1. [Image from Wang et al., 2008, GEN-178-1117]
48_FISH_TAG-115-675.jpg	Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675]

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	CCRI-36 x Hai-7124, F2 (2007)	AD_ch10_At.10	N/A	40.9	TMA18	View
2	Emian-22 x 3-79, BC1 (2011)	AD_ch10_At.10	N/A	84.78	TMB0307	View
3	AD-genome wide Reference Map (2009)	AD_ch10_At.10	N/A	158	TMB0307	View
4	TM-1 x 3-79, RIL (2012)	AD_ch10_At.10	N/A	57.48	TMB0307	View
5	TM-1 x 3-79, RIL (2014)	AD_ch10_At.10	N/A	61.3	TMB0307	View
6	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch10_At.10	N/A	74.7	TMB0307	View
7	Handan-208 x Pima-90, F2:3 (2007)	AD_ch10_At.10	N/A	160.1	TMHA18	View
8	TM-1 x Hai-7124, BC1 (2007)	AD_ch10_At.10	N/A	50.7	TMC10-200	View
9	TM-1 x Hai-7124, BC1 (2008)	AD_ch10_At.10	N/A	62.93	TMC10-200	View
10	Vsg x (TM-1 x Hai-7124), DH (2005)	AD_ch10_At.10	N/A	129.5	TMC10-200	View
11	TM-1 x Hai-7124, BC1 (2012)	AD_ch10_At.10	N/A	65.2	TMC10-200	View
12	TM-1 x Hai-7124, BC1 (2007)	AD_ch10_At.10	N/A	54.2	TMA18-180	View
13	TM-1 x Hai-7124, BC1 (2008)	AD_ch10_At.10	N/A	67.21	TMA18-180	View
14	TM-1 x Hai-7124, BC1 (2012)	AD_ch10_At.10	N/A	60.8	TMA18-180	View
15	TM-1 x 3-79, RIL (2012.v3)	AD_ch10_At.10	N/A	61.34	TMB0307	View

Sequence

>TMB0307 ID=TMB0307; Name=TMB0307; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
GGAGCCTGGGTCTCTAGCTTAAAACGACGTCGTTTTGCTTTTACTATTTA
AATCAATTTTTTTAAACCTCATTTTCTTTCCTCTTTCTTTTAAAAACATA
AGAAAACTCTCTCAAGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCCAATATCCGGACAAAGTTCAGTCACCAGACCACCG
T

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TMB0307, TMB0307 (genetic_marker) Gossypium hirsutum