BNL2705, BNL2705 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2705
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2705_orig
Source Typegenomic
Repeat Motif(GA)22
PCR ConditionAnnealing temperature: 55
Primer 1BNL2705_F: TGGTGACTGAACTTTGTCCG
Primer 2BNL2705_R: CGACGTCGTTTTGCTTTTAC
PolymorphismP_ BNL2705
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A10chromosomeA10:85849572..85849737 -
A10chromosomeA10:76082276..76082439 -
Ghir_A10chromosomeGhir_A10:89810111..89810276 -
A10chromosomeA10:91248426..91248591 -
A10chromosomeA10:90009116..90009279 -
A10chromosomeA10:85112171..85112334 -
CM017645.1chromosomeCM017645.1:93440345..93440502 -
A10chromosomeA10:93002509..93002674 -
Chr10chromosomeChr10:56677702..56677863 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2705_origBNL2705_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch10_At.10N/A42.4BNL2705View
2Emian-22 x 3-79, BC1 (2011)AD_ch10_At.10N/A84.96BNL2705View
3Handan-208 x Pima-90, F2:3 (2007)AD_ch10_At.10N/A160.1BNL2705View
4TM-1 x 3-79, RIL (2006)AD_ch10_At.10N/A39.7BNL2705View
5AD-genome wide Reference Map (2009)AD_ch10_At.10N/A154BNL2705View
6TM-1 x 3-79, RIL (2012)AD_ch10_At.10N/A57.66BNL2705View
7TM-1 x 3-79, RIL (2014)AD_ch10_At.10N/A61.3BNL2705View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch10_At.10N/A73.9BNL2705View
9Monsanto SSR Bin Map, (2009)AD_ch10_At.10N/A61BNL2705View
10HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch10_At.10N/A13BNL2705-D165View
11TM-1 x 3-79, RIL (2012.v3)AD_ch10_At.10N/A61.25BNL2705View
12PD 94042 x (AD)4-08, F2 (2016)AD_ch10_At.10N/A94.4BNL2705View
Sequence
>BNL2705 ID=BNL2705; Name=BNL2705; organism=Gossypium hirsutum; type=genetic_marker; length=168bp
TGGTGACTGAACTTTGTCCGGATATTGGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAAAACTTGAGAGAGTTTTCTTATGTTTT
TAAAAGAAAGAGGAAAGAAAATGAGGTTTAAAAAAATTGATTTAAATAGT
AAAAGCAAAACGACGTCG