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Map Overview
Name | Guazuncho-2 x VH8-4602, BC1 (2005) |
Species | Gossypium hirsutum x barbadense
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Population type | BC1 |
Source url | http://tropgenedb.cirad.fr/tropgene/JSP/index.jsp |
Genome group | AD |
Map type | genetic |
Map unit | cM |
Maternal parent | Guazuncho-2 |
Paternal parent | VH8-4602 |
Population size | 75 |
Number of loci | 1274 |
Number of QTL | 149 |
Number of linkage groups | 27 |
Publication | [view all] |
Contact | TropGene
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Stock
Name | Type | Details |
Guazuncho-2 x VH8-4602, BC1 | population | Alias: | GV-BC1 | Description: | genetic mapping | Population size: | 75 | Secondary id: | cdbpop_000018 | Pedigree: | Guazuncho-2 / VH8-4602 |
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Publication
Year | Publications |
2003 | Lacape JM, Nguyen TB, Thibivilliers S, Bojinov B, Courtois B, Cantrell RG, Burr B, Hau B. A combined RFLP-SSR-AFLP map of tetraploid cotton based on a Gossypium hirsutum x Gossypium barbadense backcross population. Genome / National Research Council Canada = Génome / Conseil national de recherches Canada. 2003 Aug; 46(4):612-26. |
2004 | Nguyen TB, Giband M, Brottier P, Risterucci AM, Lacape JM. Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theoretical and applied genetics. 2004 Jun; 109(1):167-75 |
Map Loci
This map contains 1,274 marker loci:
Linkage Group | Marker Name | Locus Name | Type | Position |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | pVNC163 | pVNC163c | marker_locus | 105.2 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | At18 | At18 | marker_locus | 105.2 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | BNL3259 | BNL3259a | marker_locus | 109.2 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | E7M1_172 | E7M1_172 | marker_locus | 112.6 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | CIR0084 | CIR084b | marker_locus | 128 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | JESPR0231 | JESPR231b | marker_locus | 134.3 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | CIR0228 | CIR228a | marker_locus | 137.3 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | CIR0133 | CIR133 | marker_locus | 143.4 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | CIR0202 | CIR202 | marker_locus | 152.2 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | E2M5_74 | E2M5_74 | marker_locus | 0 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | CIR0218 | CIR218a | marker_locus | 35.8 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | BNL2572 | BNL2572 | marker_locus | 52.5 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | CIR0122 | CIR122b | marker_locus | 52.5 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | pAR0138 | pAR138a | marker_locus | 60.6 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | BNL4049 | BNL4049b | marker_locus | 66 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | E8M5_350 | E8M5_350 | marker_locus | 71.9 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | A1172 | A1172 | marker_locus | 74 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | BNL0530 | BNL530b | marker_locus | 74 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | CIR0048 | CIR048a | marker_locus | 79.1 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | E2M6_121 | E2M6_121 | marker_locus | 86.2 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | E2M1_129 | E2M1_129 | marker_locus | 88.4 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | E1M3_300 | E1M3_300 | marker_locus | 95.9 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | E1M6_150 | E1M6_150 | marker_locus | 95.9 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | E1M8_246 | E1M8_246 | marker_locus | 95.9 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr04 | E3M6_95 | E3M6_95 | marker_locus | 95.9 cM |
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Map QTL
This map contains 149 QTL:
Linkage Group | Name | Type | Start | Stop | Peak |
Guazuncho-2 x VH8-4602, BC1 (2005).chr08/lgA02 | qMIC.GV-BC1_ch08 | QTL | 171.6 cM | 175.6 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr18 | qFM.GV-BC1_ch18.1 | QTL | 23.7 cM | 35.7 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr18 | qFM.GV-BC1_ch18.2 | QTL | 25.2 cM | 26.2 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr02 | qFM.GV-BC1_ch02 | QTL | 162.8 cM | 163.8 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr22 | qFM.GV-BC1_ch22 | QTL | 130.3 cM | 131.3 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | qFM.GV-BC1_ch03 | QTL | 28.7 cM | 36.7 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr05 | qFM.GV-BC1_ch05 | QTL | 176.9 cM | 177.9 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr06 | qFM.GV-BC1_ch06 | QTL | 0 cM | 6 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr08/lgA02 | qFM.GV-BC1_ch08 | QTL | 168.6 cM | 179.6 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | qDTS.GV-BC1_ch24 | QTL | 136.8 cM | 149.8 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr06 | qDTS.GV-BC1_ch06 | QTL | 138.1 cM | 139.1 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr01 | qUHML.GV-BC1_ch01 | QTL | 215.2 cM | 216.2 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr13/lgA01 | qUHML.GV-BC1_ch13.1 | QTL | 37.6 cM | 63.6 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr13/lgA01 | qUHML.GV-BC1_ch13.2 | QTL | 40.7 cM | 48.7 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr20 | qUHML.GV-BC1_ch20 | QTL | 263.1 cM | 264.1 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr21/lgD02 | qUHML.GV-BC1_ch21 | QTL | 194.8 cM | 195.8 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr25 | qUHML.GV-BC1_ch25 | QTL | -0.5 cM | 0.5 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr26 | qUHML.GV-BC1_ch26.1 | QTL | 56.7 cM | 98.7 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr26 | qUHML.GV-BC1_ch26.2 | QTL | 133.3 cM | 138.3 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | qUHML.GV-BC1_ch03.1 | QTL | 53.1 cM | 67.1 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | qUHML.GV-BC1_ch03.2 | QTL | 120 cM | 132 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr05 | qUHML.GV-BC1_ch05.1 | QTL | 26.3 cM | 43.3 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr05 | qUHML.GV-BC1_ch05.2 | QTL | 258 cM | 259 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr06 | qUHML.GV-BC1_ch06 | QTL | 138.1 cM | 139.1 cM | - |
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