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Marker Overview
| Name | CIR0228 |
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| Alias | CIR228
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| Genbank ID | AJ567174 |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Guazuncho-2 |
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| Source Sequence | AJ567174
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| Source Type | genomic |
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| Repeat Motif | (TG)12(N)3(TGTA)11 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | CIR228_F: TCCAGGTAAACTCAACAA |
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| Primer 2 | CIR228_R: TCATCAGTTCAATCACAAG |
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| Product Length | 200 |
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| Polymorphism | P_ CIR0228 |
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| Publication | [view all] |
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| Comment | Primer data obtained in 2005 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch03_At.03 | N/A | 79.8 | CIR228 | View |
| 2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch14_Dt.02 | N/A | 107.03 | CIR228 | View |
| 3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch03_At.03 | N/A | 102.05 | CIR228 | View |
| 4 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch14_Dt.02 | N/A | 88.01 | CIR228 | View |
| 5 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch03_At.03 | N/A | 76.65 | CIR228 | View |
| 6 | Emian-22 x 3-79, BC1 (2011) | AD_ch03_At.03 | N/A | 153.08 | CIR228 | View |
| 7 | GX1135 x GX100-2, F2 (2013) | AD_ch14_Dt.02 | N/A | 11.9 | CIR228 | View |
| 8 | GX1135 x GX100-2, RIL (2016) | AD_ch14_Dt.02 | N/A | 171.9 | CIR228 | View |
| 9 | GX1135 x VGX100-2, RIL (2016) | AD_ch14_Dt.02 | N/A | 5.8 | CIR228 | View |
| 10 | SG 747 x Giza 75, BIL (2013) | AD_ch03_At.03 | N/A | 72.4 | CIR228 | View |
| 11 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch03_At.03 | N/A | 137.3 | CIR228a | View |
| 12 | TM-1 x 3-79, RIL (2012) | AD_ch14_Dt.02 | N/A | 17.81 | CIR228a | View |
| 13 | TM-1 x 3-79, RIL (2014) | AD_ch14_Dt.02 | N/A | 108.6 | CIR228a | View |
| 14 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch14_Dt.02 | N/A | 167.2 | CIR228b | View |
| 15 | TM-1 x 3-79, RIL (2012) | AD_ch03_At.03 | N/A | 10.82 | CIR228b | View |
| 16 | TM-1 x 3-79, RIL (2014) | AD_ch03_At.03 | N/A | 105.6 | CIR228b | View |
| 17 | AD-genome wide Reference Map (2009) | AD_ch14_Dt.02 | N/A | 191 | cir0228 | View |
| 18 | AD-genome wide Reference Map (2009) | AD_ch03_At.03 | N/A | 188 | cir0228 | View |
| 19 | TM-1 x 3-79, RIL (2012.v3) | AD_ch03_At.03 | N/A | 105.55 | CIR228b | View |
| 20 | TM-1 x 3-79, RIL (2012.v3) | AD_ch14_Dt.02 | N/A | 108.61 | CIR228a | View |
| 21 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch03_At.03 | N/A | 22.1 | CIR228a | View |
| 22 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch14_Dt.02 | N/A | 20.5 | CIR228b | View |
Sequence
>CIR0228 ID=CIR0228; Name=CIR0228; organism=Gossypium hirsutum; type=genetic_marker; length=200bp
TCCAGGTAAACTCAACAACTTACTCAACATAGACTGTATGTATGTATGTA
TGTATGTATGTATGTATGTATGTATGTATGTCTGTGTGTGTGTGTGTGTG
TGTGTGCGCGCGCGTGCATAATATGGTTATGAAACAGTGAACAATGACAA
TTCTTGGGTCCTCTTTTTGTGATTGCCTTCACTTGTGATTGAACTGATGA
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