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Marker Overview
Name | CIR0133 |
Alias | CIR133
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Genbank ID | AJ567081 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567081
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Source Type | genomic |
Repeat Motif | (TG)11 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | CIR133_F: TAGCCATTCTCACCCA |
Primer 2 | CIR133_R: AGGCAGTCAGAGTCAAAG |
Product Length | 112 |
Polymorphism | P_ CIR0133 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch03_At.03 | N/A | 93.2 | CIR133 | View |
2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch03_At.03 | N/A | 143.4 | CIR133 | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch12_At.12 | N/A | 103.57 | CIR133 | View |
4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch03_At.03 | N/A | 107.59 | CIR133 | View |
5 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch12_At.12 | N/A | 56.68 | CIR133 | View |
6 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch03_At.03 | N/A | 70.77 | CIR133 | View |
7 | Emian-22 x 3-79, BC1 (2011) | AD_ch03_At.03 | N/A | 157.14 | CIR133 | View |
8 | Yumian-1 x T586, RIL (2006) | AD_ch03_At.03 | N/A | 13.2 | CIR133 | View |
9 | Yumian-1 x T586, RIL (2015) | AD_ch03_At.03 | N/A | 16.2 | CIR133 | View |
10 | AD-genome wide Reference Map (2009) | AD_ch03_At.03 | N/A | 189 | cir0133 | View |
11 | Yumian-1 x T586, RIL (2009) | AD_ch03_At.03 | N/A | 13.2 | CIR133/110t(C3) | View |
Sequence
>CIR0133 ID=CIR0133; Name=CIR0133; organism=Gossypium hirsutum; type=genetic_marker; length=112bp TAGCCATTCTCACCCAAAAAAAAGTGTCCGCGTGTATGTGTGTGTGTGTG TGTGTGTGTAGGATAGCCCCAGGTGAAAAGAAAGATATTTACATCTTTGA CTCTGACTGCCT
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