CIR0133, CIR0133 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0133
AliasCIR133
Genbank IDAJ567081
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567081
Source Typegenomic
Repeat Motif(TG)11
PCR ConditionAnnealing temperature: 55
Primer 1CIR133_F: TAGCCATTCTCACCCA
Primer 2CIR133_R: AGGCAGTCAGAGTCAAAG
Product Length112
PolymorphismP_ CIR0133
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567081
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:69341828..69341933 +
A03chromosomeA03:107231215..107231327 +
CM018216.1chromosomeCM018216.1:65520296..65520401 +
CM018204.1chromosomeCM018204.1:104575953..104576067 +
D5_03chromosomeD5_03:1363914..1364021 -
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:134160421..134160539 +
D10_03chromosomeD10_03:1297507..1297613 -
CM016616.1chromosomeCM016616.1:2120734..2120861 -
Dt_chr5chromosomeDt_chr5:9476079..9476184 +
scaffold190.1supercontigscaffold190.1:719132..719244 -
D02chromosomeD02:65934638..65934743 +
A03chromosomeA03:98754342..98754454 +
Ghir_D02chromosomeGhir_D02:68404082..68404187 +
Ghir_A03chromosomeGhir_A03:111524754..111524864 +
D02chromosomeD02:68400946..68401051 +
A03chromosomeA03:110139254..110139366 +
D02chromosomeD02:69739310..69739415 +
A03chromosomeA03:108630377..108630489 +
D02chromosomeD02:66855232..66855337 +
A03chromosomeA03:103901011..103901123 +
At03chromosomeAt03:100588332..100588446 +
At03chromosomeAt03:100596998..100597103 +
scaffold50168supercontigscaffold50168:11756..11870 +
scaffold50168supercontigscaffold50168:20422..20527 +
scaffold28684supercontigscaffold28684:25993..26098 -
Gbar_D02chromosomeGbar_D02:66264715..66264820 +
Gbar_A03chromosomeGbar_A03:103786584..103786698 +
D02chromosomeD02:67458107..67458212 +
A03chromosomeA03:106130290..106130400 +
CM017624.1chromosomeCM017624.1:68507778..68507883 +
CM017612.1chromosomeCM017612.1:105451791..105451905 +
CM017650.1chromosomeCM017650.1:70165433..70165538 +
CM017638.1chromosomeCM017638.1:112596971..112597093 +
CM017702.1chromosomeCM017702.1:67075108..67075213 +
CM017690.1chromosomeCM017690.1:106588123..106588233 +
D02chromosomeD02:70822007..70822112 +
A03chromosomeA03:112219064..112219176 +
Chr03chromosomeChr03:1387398..1387510 -
Chr03chromosomeChr03:1546203..1546321 -
Chr03chromosomeChr03:61713002..61713109 +
B_03chromosomeB_03:1577756..1577873 -
Chr05chromosomeChr05:64744203..64744310 +
chr05chromosomechr05:49327832..49327939 +
Chr_05chromosomeChr_05:42509314..42509420 +
Chr05chromosomeChr05:66219323..66219428 +
Chr05chromosomeChr05:43483607..43483723 +
F03chromosomeF03:108872548..108872683 +
Chr03chromosomeChr03:1581373..1581503 -
Chr05chromosomeCIR0133:1..346 .
Chr05:62794635..62794976 +
Chr5chromosomeCIR0133:1..346 .
Chr5:41725206..41725547 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567081AJ567081Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch03_At.03N/A93.2CIR133View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch03_At.03N/A143.4CIR133View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch12_At.12N/A103.57CIR133View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch03_At.03N/A107.59CIR133View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch12_At.12N/A56.68CIR133View
6Guazuncho-2 x VH8-4602, RIL (2009)AD_ch03_At.03N/A70.77CIR133View
7Emian-22 x 3-79, BC1 (2011)AD_ch03_At.03N/A157.14CIR133View
8Yumian-1 x T586, RIL (2006)AD_ch03_At.03N/A13.2CIR133View
9Yumian-1 x T586, RIL (2015)AD_ch03_At.03N/A16.2CIR133View
10AD-genome wide Reference Map (2009)AD_ch03_At.03N/A189cir0133View
11Yumian-1 x T586, RIL (2009)AD_ch03_At.03N/A13.2CIR133/110t(C3)View
Sequence
>CIR0133 ID=CIR0133; Name=CIR0133; organism=Gossypium hirsutum; type=genetic_marker; length=112bp
TAGCCATTCTCACCCAAAAAAAAGTGTCCGCGTGTATGTGTGTGTGTGTG
TGTGTGTGTAGGATAGCCCCAGGTGAAAAGAAAGATATTTACATCTTTGA
CTCTGACTGCCT