CIR0202, CIR0202 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0202
AliasCIR202
Genbank IDAJ567148
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567148
Source Typegenomic
Repeat Motif(AC)9
PCR ConditionAnnealing temperature: 55
Primer 1CIR202_F: TGAAAGTTGAAAGTGTGG
Primer 2CIR202_R: ACGCTTTAGTTGCAGAG
Product Length179
PolymorphismP_ CIR0202
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:69765438..69765616 +
CM018216.1chromosomeCM018216.1:65945799..65945982 +
D5_03chromosomeD5_03:967959..968143 -
D10_03chromosomeD10_03:900504..900679 -
CM016624.1chromosomeCM016624.1:80571..80747 -
Dt_chr5chromosomeDt_chr5:7360578..7360757 -
D02chromosomeD02:66350846..66351025 +
Ghir_D02chromosomeGhir_D02:68827274..68827453 +
Ghir_A03chromosomeGhir_A03:111959441..111959610 +
D02chromosomeD02:68833254..68833433 +
D02chromosomeD02:70163100..70163279 +
D02chromosomeD02:67278917..67279096 +
scaffold39465supercontigscaffold39465:64522..64691 -
scaffold10802supercontigscaffold10802:271773..271956 -
Gbar_D02chromosomeGbar_D02:66690018..66690201 +
Gbar_A03chromosomeGbar_A03:104217648..104217817 +
D02chromosomeD02:67893156..67893339 +
CM017624.1chromosomeCM017624.1:68923704..68923887 +
CM017650.1chromosomeCM017650.1:70575558..70575736 +
CM017702.1chromosomeCM017702.1:67486547..67486730 +
D02chromosomeD02:71245624..71245802 +
Chr03chromosomeChr03:62108422..62108606 +
Chr05chromosomeChr05:65148027..65148206 +
chr05chromosomechr05:49725867..49726137 +
Chr_05chromosomeChr_05:42884251..42884514 +
Chr05chromosomeChr05:66644051..66644229 +
Chr05chromosomeChr05:36891407..36891678 +
E03chromosomeE03:124611479..124611658 +
F03chromosomeF03:109294351..109294537 +
Chr03chromosomeChr03:1138531..1138699 -
Chr05chromosomeCIR0202:1..283 .
Chr05:63174006..63174294 +
Chr5chromosomeCIR0202:1..283 .
Chr5:42125484..42125772 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567148AJ567148Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch03_At.03N/A133.2CIR202View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch03_At.03N/A152.2CIR202View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch14_Dt.02N/A111.86CIR202View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch03_At.03N/A116.54CIR202View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch14_Dt.02N/A72.07CIR202View
6TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A2.54CIR202View
7Emian-22 x 3-79, BC1 (2011)AD_ch03_At.03N/A154.39CIR202View
8TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A123.9CIR202View
9CCRI-35 x Yumian-1, RIL (2015)AD_ch17_Dt.03N/A92CIR202View
10AD-genome wide Reference Map (2009)AD_ch03_At.03N/A195cir0202View
11CCRI-35 x Yumian-1, RIL (2017)AD_ch14_Dt.02N/A142.7CIR202View
12Guazuncho-2 x VH8-4602, consensus (2009)AD_ch14_Dt.02N/A82.88CIR0202View
13Guazuncho-2 x VH8-4602, RIL (2009)AD_ch14_Dt.02N/A92.41CIR0202View
14TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A123.88CIR202View
Sequence
>CIR0202 ID=CIR0202; Name=CIR0202; organism=Gossypium hirsutum; type=genetic_marker; length=179bp
TGAAAGTTGAAAGTGTGGGGCGCAAAGCGCAATTGACCTCGATTATATCT
TCTTAATTTACAGAGAAGTCCTTTAACTACATATAAATTGACAGCAAAAT
TATTTCTGACCAGAAAAATAAACACACACACACACACACAAAAAAAAAAG
GGACGCTGGAATCTCTGCAACTAAAGCGT