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Marker Overview
| Name | BNL4049 |
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Deltapine 90 |
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| Source Sequence | BNL4049_orig
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| Source Type | genomic |
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| Repeat Motif | (AC)11 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | BNL4049_F: AGCTGTGGAACCAATTGACC |
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| Primer 2 | BNL4049_R: ATATCATTTTACTACTGCTTTTGTGTG |
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| Polymorphism | P_ BNL4049 |
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| Comment | Primer data obtained in 2000 |
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Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch04_At.04 | N/A | 89.6 | BNL4049 | View |
| 2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch22_Dt.04 | N/A | 27.44 | BNL4049 | View |
| 3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch04_At.04 | N/A | 24.73 | BNL4049 | View |
| 4 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch22_Dt.04 | N/A | 27.06 | BNL4049 | View |
| 5 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch04_At.04 | N/A | 21.09 | BNL4049 | View |
| 6 | Hai-7124 x Junmian-1, BC1 (2008) part | AD_ch22_Dt.04 | N/A | 63.8 | BNL4049 | View |
| 7 | Palmeri x K-101, F2 (2007) | AD_ch09_At.09 | N/A | 17.3 | BNL4049 | View |
| 8 | AD-genome wide Reference Map (2009) | AD_ch22_Dt.04 | N/A | 21 | BNL4049 | View |
| 9 | AD-genome wide Reference Map (2009) | AD_ch04_At.04 | N/A | 41 | BNL4049 | View |
| 10 | AD-genome wide Reference Map (2009) | AD_ch09_At.09 | N/A | 35 | BNL4049 | View |
| 11 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch04_At.04 | N/A | 66 | BNL4049b | View |
| 12 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch22_Dt.04 | N/A | 12.9 | BNL4049b | View |
| 13 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch22_Dt.04 | N/A | 24.4 | BNL4049a | View |
| 14 | Guazuncho-2 x VH8-4602, BC2 (2005) | AD_ch04_At.04 | N/A | 7.8 | BNL4049a | View |
| 15 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch22_Dt.04 | N/A | 8.4 | BNL4049a* | View |
| 16 | TM-1 x Hai-7124, BC1 (2007) | AD_ch04_At.04 | N/A | 79.9 | BNL4049-175 | View |
| 17 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch04_At.04 | N/A | 0 | BNL4049-175 | View |
| 18 | TM-1 x Hai-7124, BC1 (2008) | AD_ch04_At.04 | N/A | 79.28 | BNL4049-175 | View |
| 19 | TM-1 x Hai-7124, BC1 (2012) | AD_ch04_At.04 | N/A | 45.9 | BNL4049-175 | View |
| 20 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch22_Dt.04 | N/A | 19.5 | BNL4049-145 | View |
| 21 | TM-1 x Hai-7124, BC1 (2007) | AD_ch22_Dt.04 | N/A | 71.4 | BNL4049-145 | View |
| 22 | TM-1 x Hai-7124, BC1 (2008) | AD_ch22_Dt.04 | N/A | 71.47 | BNL4049-145 | View |
| 23 | TM-1 x Hai-7124, BC1 (2012) | AD_ch22_Dt.04 | N/A | 51.3 | BNL4049-145 | View |
| 24 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch22_Dt.04 | N/A | 19 | BNL4049-155 | View |
| 25 | TM-1 x Hai-7124, BC1 (2007) | AD_ch22_Dt.04 | N/A | 78.1 | BNL4049-155 | View |
| 26 | TM-1 x Hai-7124, BC1 (2008) | AD_ch22_Dt.04 | N/A | 78.62 | BNL4049-155 | View |
| 27 | TM-1 x Hai-7124, BC1 (2012) | AD_ch22_Dt.04 | N/A | 81.4 | BNL4049-155 | View |
| 28 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch22_Dt.04 | N/A | 0 | BNL4049-160 | View |
Sequence
>BNL4049 ID=BNL4049; Name=BNL4049; organism=Gossypium hirsutum; type=genetic_marker; length=159bp
AGCTGTGGAACCAATTGACCAGATAGATTTGCATTCCCAAGATCCCTAAA
TTGAAAAAAAAAAAAAAAGAAGAGGGAAAGCATTTACTATGTCAAATGAG
AAAACAGAAAAAAAAACACACACACACACACACACACAAAAGCAGTAGTA
AAATGATAT
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