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Map Overview
Name | Guazuncho-2 x VH8-4602, BC1 (2005) |
Species | Gossypium hirsutum x barbadense
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Population type | BC1 |
Source url | http://tropgenedb.cirad.fr/tropgene/JSP/index.jsp |
Genome group | AD |
Map type | genetic |
Map unit | cM |
Maternal parent | Guazuncho-2 |
Paternal parent | VH8-4602 |
Population size | 75 |
Number of loci | 1274 |
Number of QTL | 149 |
Number of linkage groups | 27 |
Publication | [view all] |
Contact | TropGene
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Stock
Name | Type | Details |
Guazuncho-2 x VH8-4602, BC1 | population | Alias: | GV-BC1 | Description: | genetic mapping | Population size: | 75 | Secondary id: | cdbpop_000018 | Pedigree: | Guazuncho-2 / VH8-4602 |
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Publication
Year | Publications |
2003 | Lacape JM, Nguyen TB, Thibivilliers S, Bojinov B, Courtois B, Cantrell RG, Burr B, Hau B. A combined RFLP-SSR-AFLP map of tetraploid cotton based on a Gossypium hirsutum x Gossypium barbadense backcross population. Genome / National Research Council Canada = Génome / Conseil national de recherches Canada. 2003 Aug; 46(4):612-26. |
2004 | Nguyen TB, Giband M, Brottier P, Risterucci AM, Lacape JM. Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theoretical and applied genetics. 2004 Jun; 109(1):167-75 |
Map Loci
This map contains 1,274 marker loci:
Linkage Group | Marker Name | Locus Name | Type | Position |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | BNL3441 | BNL3441 | marker_locus | 39.7 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | CIR0058 | CIR058 | marker_locus | 39.7 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | E2M7_310 | E2M7_310 | marker_locus | 41 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | E7M6_328 | E7M6_328 | marker_locus | 41 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | BNL3627 | BNL3627b | marker_locus | 41 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | BNL1059 | BNL1059b | marker_locus | 41 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | E1M2_450 | E1M2_450 | marker_locus | 42.7 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | E6M5_161 | E6M5_161 | marker_locus | 42.7 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | E5M8_143 | E5M8_143 | marker_locus | 52.4 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | E5M3_450 | E5M3_450 | marker_locus | 53.8 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | E5M8_87 | E5M8_87 | marker_locus | 53.8 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | E7M4_185 | E7M4_185 | marker_locus | 55.1 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | E8M1_400 | E8M1_400 | marker_locus | 55.1 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | E8M5_155 | E8M5_155 | marker_locus | 61.1 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | A1145 | A1145 | marker_locus | 67.1 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | BNL0226 | BNL226b | marker_locus | 82.5 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | E4M8_79 | E4M8_79 | marker_locus | 90.5 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | BNL3989 | BNL3989 | marker_locus | 90.5 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | E5M3_320 | E5M3_320 | marker_locus | 94.5 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | CIR0245 | CIR245a | marker_locus | 94.5 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | G1164 | G1164a | marker_locus | 95.8 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | CIR0332 | CIR332 | marker_locus | 95.8 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | CIR0212 | CIR212a | marker_locus | 103.9 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | CIR0263 | CIR263 | marker_locus | 103.9 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | pAR0815 | pAR815a | marker_locus | 105.2 cM |
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Map QTL
This map contains 149 QTL:
Linkage Group | Name | Type | Start | Stop | Peak |
Guazuncho-2 x VH8-4602, BC1 (2005).chr05 | qHS.GV-BC1_ch05.1 | QTL | 18.5 cM | 37.5 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr05 | qHS.GV-BC1_ch05.2 | QTL | 325.8 cM | 347.8 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr06 | qHS.GV-BC1_ch06 | QTL | 132.9 cM | 176.9 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr09 | qHS.GV-BC1_ch09 | QTL | 256.9 cM | 257.9 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr01 | qDTLn.GV-BC1_ch01 | QTL | 214.1 cM | 215.1 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr13/lgA01 | qDTLn.GV-BC1_ch13.1 | QTL | 132.9 cM | 149.9 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr13/lgA01 | qDTLn.GV-BC1_ch13.2 | QTL | 139.3 cM | 146.3 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr21/lgD02 | qDTLn.GV-BC1_ch21 | QTL | 189.3 cM | 201.3 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr06 | qDTLn.GV-BC1_ch06.1 | QTL | 139 cM | 154 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr06 | qDTLn.GV-BC1_ch06.2 | QTL | 136.6 cM | 149.6 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr17 | qDTL.GV-BC1_ch17 | QTL | 22.5 cM | 23.5 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr21/lgD02 | qDTL.GV-BC1_ch21.1 | QTL | 30.8 cM | 31.8 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr21/lgD02 | qDTL.GV-BC1_ch21.2 | QTL | 277 cM | 278 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | qDTL.GV-BC1_ch24 | QTL | 130.8 cM | 151.8 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr06 | qDTL.GV-BC1_ch06 | QTL | 144 cM | 149 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr10 | qMIC.GV-BC1_ch10 | QTL | -0.1 cM | 19.9 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr19/lgD08 | qMIC.GV-BC1_ch19.1 | QTL | 114 cM | 115 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr19/lgD08 | qMIC.GV-BC1_ch19.2 | QTL | 16.8 cM | 17.8 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr21/lgD02 | qMIC.GV-BC1_ch21 | QTL | 122.5 cM | 123.5 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr22 | qMIC.GV-BC1_ch22 | QTL | 130.3 cM | 131.3 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr23 | qMIC.GV-BC1_ch23 | QTL | 173.9 cM | 174.9 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | qMIC.GV-BC1_ch24 | QTL | 29 cM | 49 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | qMIC.GV-BC1_ch03.1 | QTL | 31.4 cM | 38.4 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | qMIC.GV-BC1_ch03.2 | QTL | 46.1 cM | 71.1 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr06 | qMIC.GV-BC1_ch06 | QTL | 0 cM | 4 cM | - |
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