CIR0058, CIR0058 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0058
AliasCIR58
CIR058
Genbank IDAJ567007
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567007
Source Typegenomic
Repeat Motif(GT)8
PCR ConditionAnnealing temperature: 55
Primer 1CIR058_F: CCATCTTCCTTTCATACC
Primer 2CIR058_R: AGCTGAAGAACTATACCCA
Product Length58
PolymorphismP_ CIR0058
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567007
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A03chromosomeA03:28652077..28652134 +
CM018204.1chromosomeCM018204.1:24479516..24479575 +
D5_03chromosomeD5_03:43913092..43913155 -
KI_03chromosomeKI_03:10606470..10606539 +
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:51867462..51867521 -
D10_03chromosomeD10_03:45490203..45490290 -
CM016616.1chromosomeCM016616.1:111746130..111746195 -
At_chr12chromosomeAt_chr12:68163942..68163999 +
A03chromosomeA03:26148905..26148962 +
Ghir_A03chromosomeGhir_A03:25988046..25988103 +
A03chromosomeA03:24785572..24785629 +
A03chromosomeA03:25566762..25566819 +
A03chromosomeA03:24582350..24582407 +
At03chromosomeAt03:27939658..27939717 +
scaffold2783supercontigscaffold2783:317532..317591 +
scaffold8630supercontigscaffold8630:88863..88924 -
scaffold8630supercontigscaffold8630:84309..84370 -
Gbar_A03chromosomeGbar_A03:24502682..24502741 +
A03chromosomeA03:24405429..24405488 +
CM017612.1chromosomeCM017612.1:24798149..24798206 +
CM017638.1chromosomeCM017638.1:25437290..25437349 +
CM017690.1chromosomeCM017690.1:24584901..24584962 +
A03chromosomeA03:26024884..26024941 +
Chr03chromosomeChr03:83909330..83909389 +
Chr03chromosomeChr03:82513736..82513795 -
Chr03chromosomeChr03:18999405..18999468 +
B_03chromosomeB_03:63466537..63466602 +
Chr05chromosomeChr05:20828166..20828231 +
chr05chromosomechr05:16068638..16068703 +
Chr05chromosomeChr05:14268971..14269036 +
Chr05chromosomeChr05:11878446..11878513 +
E03chromosomeE03:37839562..37839619 +
F03chromosomeF03:25146280..25146341 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567007AJ567007Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch03_At.03N/A39.7CIR058View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch14_Dt.02N/A54.5CIR058View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch03_At.03N/A35.93CIR058View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch14_Dt.02N/A50.63CIR058View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch03_At.03N/A23.56CIR058View
6AD-genome wide Reference Map (2009)AD_ch03_At.03N/A65cir0058View
Sequence
>CIR0058 ID=CIR0058; Name=CIR0058; organism=Gossypium hirsutum; type=genetic_marker; length=58bp
CCATCTTCCTTTCATACCTTGGTGTGTGTGTGTGTGTGATGGGTATAGTT
CTTCAGCT