CIR0058, CIR0058 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0058
AliasCIR58
CIR058
Genbank IDAJ567007
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567007
Source Typegenomic
Repeat Motif(GT)8
PCR ConditionAnnealing temperature: 55
Primer 1CIR058_F: CCATCTTCCTTTCATACC
Primer 2CIR058_R: AGCTGAAGAACTATACCCA
Product Length58
PolymorphismP_ CIR0058
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A03chromosomeA03:28652077..28652134 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018204.1chromosomeCM018204.1:24479516..24479575 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_03chromosomeD5_03:43913092..43913155 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
KI_03chromosomeKI_03:10606470..10606539 +Gossypioides kirkii genome ISU_v3
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:51867462..51867521 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_03chromosomeD10_03:45490203..45490290 -Gossypium turneri (D10) genome NSF_v1_a2
CM016616.1chromosomeCM016616.1:111746130..111746195 -Gossypium australe (G2) genome CRI_v1.1
At_chr12chromosomeAt_chr12:68163942..68163999 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A03chromosomeA03:26148905..26148962 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A03chromosomeGhir_A03:25988046..25988103 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A03chromosomeA03:24785572..24785629 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A03chromosomeA03:25566762..25566819 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A03chromosomeA03:24582350..24582407 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
At03chromosomeAt03:27939658..27939717 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold2783supercontigscaffold2783:317532..317591 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold8630supercontigscaffold8630:88863..88924 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold8630supercontigscaffold8630:84309..84370 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A03chromosomeGbar_A03:24502682..24502741 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A03chromosomeA03:24405429..24405488 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017612.1chromosomeCM017612.1:24798149..24798206 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017638.1chromosomeCM017638.1:25437290..25437349 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017690.1chromosomeCM017690.1:24584901..24584962 +Gossypium darwinii (AD5) genome HGS_v1.1
A03chromosomeA03:26024884..26024941 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr03chromosomeChr03:83909330..83909389 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr03chromosomeChr03:82513736..82513795 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr03chromosomeChr03:18999405..18999468 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_03chromosomeB_03:63466537..63466602 +Gossypium anomalum (B1) genome NSF_v1
Chr05chromosomeChr05:20828166..20828231 +Gossypium thurberi (D1-5) genome CRI_v1
chr05chromosomechr05:16068638..16068703 +Gossypium armourianum (D2-1) genome ISU_v1
Chr05chromosomeChr05:14268971..14269036 +Gossypium aridum (D4) genome ISU_v1
Chr05chromosomeChr05:11878446..11878513 +Gossypium gossypioides (D6) genome ISU_v1
E03chromosomeE03:37839562..37839619 +Gossypium stocksii (E1) genome NSF_v1
F03chromosomeF03:25146280..25146341 -Gossypium longicalyx (F1) genome NSF_v1
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567007AJ567007Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch03_At.03N/A39.7CIR058View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch14_Dt.02N/A54.5CIR058View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch03_At.03N/A35.93CIR058View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch14_Dt.02N/A50.63CIR058View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch03_At.03N/A23.56CIR058View
6AD-genome wide Reference Map (2009)AD_ch03_At.03N/A65cir0058View
Sequence
>CIR0058 ID=CIR0058; Name=CIR0058; organism=Gossypium hirsutum; type=genetic_marker; length=58bp
CCATCTTCCTTTCATACCTTGGTGTGTGTGTGTGTGTGATGGGTATAGTT
CTTCAGCT