BNL3441, BNL3441 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3441
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3441_orig
Source Typegenomic
Repeat Motif(AC)18, (AT)2(AC)18(AT)4
PCR ConditionAnnealing temperature: 55
Primer 1BNL3441_F: CGTCATAAACCGTGCTTGTG
Primer 2BNL3441_R: GGCCACTTTAAGGCTGTCAC
PolymorphismP_ BNL3441
CommentPrimer data obtained in 2000
Germplasm
Stock NameType
Deltapine 90obsolete_cultivar
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL3441_FBNL3441_FGossypium hirsutumprimer
BNL3441_RBNL3441_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
lint yieldqLY.SG-BIL_ch03.ay07Gossypium hirsutum x barbadenseQTL
seed cotton yieldqSCY.SG-BIL_ch03.ay07Gossypium hirsutum x barbadenseQTL


This genetic_marker is contained in the following chromosome_arm feature(s):

Feature NameUnique NameSpeciesType
3 short3 shortGossypium hirsutumchromosome_arm


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3441BNL3441Gossypium hirsutummarker_locus
BNL3441aBNL3441aGossypium hirsutummarker_locus
BNL3441-205BNL3441-205Gossypium hirsutummarker_locus
BNL3441BNL3441-47.793Gossypium hirsutummarker_locus
BNL3441BNL3441-129Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3441_origBNL3441_origGossypium hirsutumsequence_feature


Sequence
>BNL3441 ID=BNL3441|Name=BNL3441|organism=Gossypium hirsutum|type=genetic_marker|length=210bp
CGTCATAAACCGTGCTTGTGATTATCTCTAAGCATTTATACTAACACTTG
AAATTCAGTGAAAAAATGAGTAGAAACATACTTGATATTTATATTTTATA
TTAAACCCAAGAACTTAGTATTAATTAAAAACATGAATTGAATATATATG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNATATGTGACAGCCT
TAAAGTGGCC
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
13-79 x NM24016, RIL (2008)3-79 x NM24016, RIL (2008).3N-RIL_chr03-1N/AAD_chr.030BNL3441View
2CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr03N/AAD_chr.0319BNL3441View
3Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr03N/AAD_chr.0383.35BNL3441View
4Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr03N/AAD_chr.0339.7BNL3441View
5Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c03N/AAD_chr.0335.73BNL3441View
6Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr03N/AAD_chr.0390BNL3441View
7Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg19/chr03N/AAD_chr.0334BNL3441View
8AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr03N/AAD_chr.0365BNL3441View
9TM-1 x 3-79, RIL (2006)TM-1 x 3-79, RIL (2006).T3-RIL_chr.03N/AAD_chr.0352BNL3441View
10TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c03N/AAD_chr.0368.58BNL3441View
11T582 x Hai-7124, F2 (2010)T5H-F2_chr3N/AAD_chr.0366.6BNL3441View
12TM-1 x 3-79, RIL (2014)T3-RIL.14_chr03N/AAD_chr.0347.8BNL3441View
13CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr03N/AAt.03107.3BNL3441View
14SG 747 x Giza 75, BIL (2013)SG-BIL_chr03N/AAD_chr.0359.2BNL3441View
15Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr03N/AAD_chr.0370BNL3441aView
16TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr03N/AAD_chr.0366.6BNL3441-205View
17TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr03/A3N/AAD_chr.0364.45BNL3441-205View
18Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_chr03N/AAD_chr.0336.2BNL3441-205View
19TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.03N/AAD_chr.0347.79BNL3441View
20PD 94042 x (AD)4-08, F2 (2016)PA-F2_chr03N/AAt.03129BNL3441View
Image
File NameLegend
48_FISH_TAG-115-675.jpgTwenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675]