pVNC163, pVNC163 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepVNC163
Genbank IDCA997814
TypeRFLP
SpeciesGossypium hirsutum
GermplasmTamcot GCNH
Source TypecDNA
Restriction EnzymeNot1; Sall
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA997814
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:24232806..24232926 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:71748815..71748935 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:22932300..22932420 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:71527749..71527869 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:39679050..39679170 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:34289048..34289165 -Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:90203860..90203980 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:41732689..41732809 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:52259617..52259736 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:31149828..31149948 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:22019107..22019227 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:22984010..22984130 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:64147903..64148023 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:23090302..23090422 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:75537233..75537353 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:22447834..22447954 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:77150517..77150637 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:23250629..23250749 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:75568149..75568269 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:23224832..23224952 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:71062737..71062857 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:25195455..25195575 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt10chromosomeDt10:25182517..25182637 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At10chromosomeAt10:66564184..66564304 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold611supercontigscaffold611:784298..784418 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold611supercontigscaffold611:771360..771480 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7643supercontigscaffold7643:95310..95430 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:22756147..22756267 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:71924627..71924747 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:23149111..23149231 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:73345598..73345718 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:22773645..22773765 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:72487306..72487426 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:23270329..23270449 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:78963728..78963848 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:23360605..23360725 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:74519389..74519509 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:23377331..23377451 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:78497856..78497976 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:41089789..41089909 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:37973579..37973699 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:22500976..22501096 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:68282280..68282400 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:42913090..42913210 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:19593786..19593906 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr11_1983472chromosomeChr11_1983472:1403..1523 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:23000851..23000971 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:18077693..18077810 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:14159393..14159513 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:18095454..18095574 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:74474674..74474794 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:31169625..31169745 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:100003355..100003475 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomepVNC163:1..121 .
Chr11:22482522..22482642 +
n/a
Chr11chromosomepVNC163:1..121 .
Chr11:22219699..22219819 +
n/a
Chr11chromosomepVNC163:1..121 .
Chr11:22213329..22213449 +
n/a
Germplasm
Stock NameType
Tamcot GCNHaccession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CAMD-E x Seaberry, F2 (1998)AD_ch09_At.09N/A34.2PVNC163aView
2Deltapine-61 x Seaberry, F2 (2000)AD_ch10_At.10N/A76.7PVNC163aView
3Pima S-7 x Empire, F2 (2007)AD_ch10_At.10N/A66.4PVNC163aView
4Pima S-7 x im, F2 (2007)AD_ch10_At.10N/A0PVNC163aView
5Pima S-7 x n2, F2 (2007)AD_ch10_At.10N/A0PVNC163aView
6Palmeri x K-101, F2 (2007)AD_ch10_At.10N/A85.2PVNC163aView
7CAMD-E x Seaberry, F2 (1998)AD_ch23_Dt.09N/A0PVNC163bView
8Palmeri x K-101, F2 (2007)AD_ch20_Dt.10N/A77.6PVNC163bView
9Pima S-7 x Empire, F2 (2007)AD_ch20_Dt.10N/A2.4PVNC163bView
10Pima S-7 x im, F2 (2007)AD_ch20_Dt.10N/A74.9PVNC163bView
11Pima S-7 x n2, F2 (2007)AD_ch20_Dt.10N/A86.2PVNC163bView
12Sic'on x F-177, F2 (2004)AD_ch10_At.10N/A100.1PVNC163bView
13Deltapine-61 x Seaberry, F2 (2000)AD_ch20_Dt.10N/A144.5pVNC163View
14Guazuncho-2 x VH8-4602, consensus (2009)AD_ch03_At.03N/A94.77pVNC163View
15AD-genome wide Reference Map (2009)AD_ch10_At.10N/A26pVNC163View
16AD-genome wide Reference Map (2009)AD_ch23_Dt.09N/A48pVNC163View
17AD-genome wide Reference Map (2009)AD_ch09_At.09N/A37pVNC163View
18Sic'on x F-177, F2 (2004)AD_ch20_Dt.10N/A71.6pVNC163View
19TM-1 x WT-936, F2 (2005)AD_ch23_Dt.09N/A26.9pVNC163View
20Gtr x Gra, F2 (2004)D.10N/A50pVNC163View
21AD-genome wide Reference Map (2009)AD_ch20_Dt.10N/A87pVNC163View
22AD-genome wide Reference Map (2009)AD_ch03_At.03N/A175pVNC163View
23Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch03_At.03N/A105.2pVNC163cView
24PD 94042 x (AD)4-08, F2 (2016)AD_ch10_At.10N/A78pVNC163View
Sequence
>pVNC163 ID=pVNC163; Name=pVNC163; organism=Gossypium hirsutum; type=genetic_marker; length=121bp
GGTATTAAGCGTAGACAATCGAATCCTTACCTTCCCAATTCTCCGGTCCT
GCGAATCTACAGCGTTACTTCCTCCTTGCAAGTGACAGTTGTCGAAAACT
CCGATGGTGATAACCGTATAA