Sic'on x F-177, F2 (2004)

Map Overview


Name	Sic'on x F-177, F2 (2004)
Species	Gossypium hirsutum x barbadense
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	Sic'on
Paternal parent	F-177
Population size	406
Number of loci	262
Number of QTL	175
Number of linkage groups	35
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

Sic'on x F-177, F2

population

Alias:	SF-F2
Description:	genetic mapping
Population size:	406
Secondary id:	cdbpop_000055
Pedigree:	Sic'on / F-177

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
2001	Saranga Y, Menz M, Jiang CX, Wright RJ, Yakir D, Paterson AH. Genomic dissection of genotype x environment interactions conferring adaptation of cotton to arid conditions. Genome research. 2001 Dec; 11(12):1988-95
2003	Paterson AH, Saranga Y, Menz M, Jiang CX, Wright RJ. QTL analysis of genotype x environment interactions affecting cotton fiber quality. Theoretical and applied genetics. 2003 Feb; 106(3):384-96
2004	Genetic dissection of cotton physiological responses to arid conditions and their inter-relationships with productivity.

Map Loci

This map contains 262 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Sic'on x F-177, F2 (2004).chr01	pAR0658	pAR0658	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr01	A1794	A1794	marker_locus	72.6 cM
Sic'on x F-177, F2 (2004).chr01	A1593	A1593	marker_locus	113.4 cM
Sic'on x F-177, F2 (2004).chr01	A1686	A1686a	marker_locus	128.2 cM
Sic'on x F-177, F2 (2004).chr01	pAR0883	PAR0883	marker_locus	133 cM
Sic'on x F-177, F2 (2004).chr01	pAR0099	pAR0099b	marker_locus	135.8 cM
Sic'on x F-177, F2 (2004).chr01	Coau2C11	Coau2C11	marker_locus	147.1 cM
Sic'on x F-177, F2 (2004).chr01	pAR0377	pAR0377	marker_locus	162.9 cM
Sic'on x F-177, F2 (2004).chr01	A1204	A1204	marker_locus	179.6 cM
Sic'on x F-177, F2 (2004).chr01	pGH468	pGH468	marker_locus	194.4 cM
Sic'on x F-177, F2 (2004).chr01	G1097	G1097	marker_locus	200.6 cM
Sic'on x F-177, F2 (2004).chr01	pAR0077	pAR0077b	marker_locus	212.7 cM
Sic'on x F-177, F2 (2004).chr01	G1099	G1099c	marker_locus	232.3 cM
Sic'on x F-177, F2 (2004).chr02	pAR0451	pAR0451	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr02	pAR0451	pAR0451a	marker_locus	2.4 cM
Sic'on x F-177, F2 (2004).chr02	pAR0390	pAR0390a	marker_locus	17.5 cM
Sic'on x F-177, F2 (2004).chr02	pAR0390	pAR0390b	marker_locus	26.6 cM
Sic'on x F-177, F2 (2004).chr02	A1325	A1325	marker_locus	46.6 cM
Sic'on x F-177, F2 (2004).chr02	pGH399	pGH399b	marker_locus	57.5 cM
Sic'on x F-177, F2 (2004).chr02	pAR0499	pAR0499	marker_locus	60.4 cM
Sic'on x F-177, F2 (2004).chr02	pAR0316	pAR0316	marker_locus	89.1 cM
Sic'on x F-177, F2 (2004).chr03	pGH639	pGH639	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr03	pAR0172	pAR0172	marker_locus	34.8 cM
Sic'on x F-177, F2 (2004).chr03	pAR04-14	pAR4-14	marker_locus	46.9 cM
Sic'on x F-177, F2 (2004).chr03	pGH364	pGH364	marker_locus	54.3 cM

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Map QTL

This map contains 175 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Sic'on x F-177, F2 (2004).chr12	q13C.SF-F2_ch12	QTL	14.2 cM	35.5 cM	-
Sic'on x F-177, F2 (2004).chr14	q13C.SF-F2_ch14.1	QTL	16.4 cM	27.7 cM	-
Sic'on x F-177, F2 (2004).chr14	q13C.SF-F2_ch14.2	QTL	72 cM	90.9 cM	-
Sic'on x F-177, F2 (2004).chr14	q13C.SF-F2_ch14.3	QTL	82.1 cM	101 cM	-
Sic'on x F-177, F2 (2004).chr14	q13C.SF-F2_ch14.4	QTL	145.3 cM	156.6 cM	-
Sic'on x F-177, F2 (2004).chr15	q13C.SF-F2_ch15	QTL	77.1 cM	110.8 cM	-
Sic'on x F-177, F2 (2004).chr20	q13C.SF-F2_ch20	QTL	0 cM	24.9 cM	-
Sic'on x F-177, F2 (2004).chr21/lgD02	q13C.SF-F2_ch21.1	QTL	0 cM	80.6 cM	-
Sic'on x F-177, F2 (2004).chr21/lgD02	q13C.SF-F2_ch21.2	QTL	186 cM	199.3 cM	-
Sic'on x F-177, F2 (2004).chr24/lgD03	q13C.SF-F2_ch24	QTL	72.6 cM	114.2 cM	-
Sic'on x F-177, F2 (2004).chr25	q13C.SF-F2_ch25	QTL	15.2 cM	35.3 cM	-
Sic'on x F-177, F2 (2004).chr26.1	q13C.SF-F2_ch26.1	QTL	161.2 cM	167.3 cM	-
Sic'on x F-177, F2 (2004).chr03	q13C.SF-F2_ch03	QTL	15.1 cM	44.2 cM	-
Sic'on x F-177, F2 (2004).chr07.2	q13C.SF-F2_ch07.2	QTL	10 cM	33.1 cM	-
Sic'on x F-177, F2 (2004).chr21/lgD02	qBN.SF-F2_ch21	QTL	0 cM	20.1 cM	-
Sic'on x F-177, F2 (2004).chr04	qBN.SF-F2_ch04	QTL	32.7 cM	51.3 cM	-
Sic'on x F-177, F2 (2004).chr07.2	qBN.SF-F2_ch07.1	QTL	29.8 cM	43.1 cM	-
Sic'on x F-177, F2 (2004).chr08/lgA02	qBN.SF-F2_ch08	QTL	47.9 cM	74.4 cM	-
Sic'on x F-177, F2 (2004).chr11/lgA03	qBWT.SF-F2_ch11.1	QTL	23.3 cM	41.5 cM	-
Sic'on x F-177, F2 (2004).chr11/lgA03	qBWT.SF-F2_ch11.2	QTL	92.3 cM	121.3 cM	-
Sic'on x F-177, F2 (2004).chr13/lgA01.3	qBWT.SF-F2_ch13	QTL	35 cM	58.4 cM	-
Sic'on x F-177, F2 (2004).chr14	qBWT.SF-F2_ch14.1	QTL	22.9 cM	42.2 cM	-
Sic'on x F-177, F2 (2004).chr14	qBWT.SF-F2_ch14.2	QTL	22.9 cM	42.2 cM	-
Sic'on x F-177, F2 (2004).chr14	qBWT.SF-F2_ch14.3	QTL	52.6 cM	97 cM	-
Sic'on x F-177, F2 (2004).chr14	qBWT.SF-F2_ch14.4	QTL	76 cM	120.4 cM	-

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Sic'on x F-177, F2 (2004)