Sic'on x F-177, F2 (2004)

Map Overview


Name	Sic'on x F-177, F2 (2004)
Species	Gossypium hirsutum x barbadense
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	Sic'on
Paternal parent	F-177
Population size	406
Number of loci	262
Number of QTL	175
Number of linkage groups	35
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

Sic'on x F-177, F2

population

Alias:	SF-F2
Description:	genetic mapping
Population size:	406
Secondary id:	cdbpop_000055
Pedigree:	Sic'on / F-177

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
2001	Saranga Y, Menz M, Jiang CX, Wright RJ, Yakir D, Paterson AH. Genomic dissection of genotype x environment interactions conferring adaptation of cotton to arid conditions. Genome research. 2001 Dec; 11(12):1988-95
2003	Paterson AH, Saranga Y, Menz M, Jiang CX, Wright RJ. QTL analysis of genotype x environment interactions affecting cotton fiber quality. Theoretical and applied genetics. 2003 Feb; 106(3):384-96
2004	Genetic dissection of cotton physiological responses to arid conditions and their inter-relationships with productivity.

Map Loci

This map contains 262 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Sic'on x F-177, F2 (2004).chr14	G1147	G1147	marker_locus	57.4 cM
Sic'on x F-177, F2 (2004).chr14	A1727	A1727	marker_locus	64.3 cM
Sic'on x F-177, F2 (2004).chr14	A1148	A1148	marker_locus	68.5 cM
Sic'on x F-177, F2 (2004).chr14	A1148	A1148	marker_locus	68.5 cM
Sic'on x F-177, F2 (2004).chr14	A1222	A1222	marker_locus	80.1 cM
Sic'on x F-177, F2 (2004).chr14	A1222	A1222	marker_locus	92.9 cM
Sic'on x F-177, F2 (2004).chr14	A1148	A1148	marker_locus	104.5 cM
Sic'on x F-177, F2 (2004).chr14	A1727	A1727	marker_locus	108.7 cM
Sic'on x F-177, F2 (2004).chr14	G1147	G1147	marker_locus	115.6 cM
Sic'on x F-177, F2 (2004).chr14	pAR0545	pAR0545	marker_locus	127.6 cM
Sic'on x F-177, F2 (2004).chr14	pAR0815	pAR0815	marker_locus	132.2 cM
Sic'on x F-177, F2 (2004).chr14	pAR0451	pAR0451b	marker_locus	155.9 cM
Sic'on x F-177, F2 (2004).chr14	pAR0451	pAR0451	marker_locus	156.1 cM
Sic'on x F-177, F2 (2004).chr14	A1580	A1580	marker_locus	162.9 cM
Sic'on x F-177, F2 (2004).chr14	G1012	G1012	marker_locus	173 cM
Sic'on x F-177, F2 (2004).chr14	pAR0175	pAR0175	marker_locus	173 cM
Sic'on x F-177, F2 (2004).chr15	pAR01-14	pAR1-14	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr15	G1033	G1033b	marker_locus	12.2 cM
Sic'on x F-177, F2 (2004).chr15	A1485	A1485b	marker_locus	29.5 cM
Sic'on x F-177, F2 (2004).chr15	A1485	A1485a	marker_locus	30.6 cM
Sic'on x F-177, F2 (2004).chr15	pAR0019	pAR0019	marker_locus	49.7 cM
Sic'on x F-177, F2 (2004).chr15	pAR0906	par0906	marker_locus	63.2 cM
Sic'on x F-177, F2 (2004).chr15	A1109	A1109	marker_locus	88.3 cM
Sic'on x F-177, F2 (2004).chr15	P05-39	P05-39	marker_locus	116.8 cM
Sic'on x F-177, F2 (2004).chr15	pAR0099	pAR0099a	marker_locus	127.5 cM

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Map QTL

This map contains 175 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Sic'on x F-177, F2 (2004).chr14	qFU.SF-F2_ch14.1	QTL	43 cM	64.3 cM	-
Sic'on x F-177, F2 (2004).chr14	qFU.SF-F2_ch14.2	QTL	108.7 cM	130 cM	-
Sic'on x F-177, F2 (2004).chr14	qFU.SF-F2_ch14.3	QTL	108.7 cM	130 cM	-
Sic'on x F-177, F2 (2004).chr15	qFU.SF-F2_ch15	QTL	57.7 cM	76.3 cM	-
Sic'on x F-177, F2 (2004).chr16	qFU.SF-F2_ch16	QTL	48.1 cM	71.7 cM	-
Sic'on x F-177, F2 (2004).chr26.1	qFU.SF-F2_ch26	QTL	161.2 cM	186.9 cM	-
Sic'on x F-177, F2 (2004).chr04	qFU.SF-F2_ch04	QTL	65 cM	86 cM	-
Sic'on x F-177, F2 (2004).chr07	qFU.SF-F2_ch07	QTL	0 cM	17.3 cM	-
Sic'on x F-177, F2 (2004).chr11/lgA03	qHI.SF-F2_ch11.1	QTL	18.3 cM	48.8 cM	-
Sic'on x F-177, F2 (2004).chr11/lgA03	qHI.SF-F2_ch11.2	QTL	95.9 cM	139.5 cM	-
Sic'on x F-177, F2 (2004).chr14	qHI.SF-F2_ch14.1	QTL	47.9 cM	78.5 cM	-
Sic'on x F-177, F2 (2004).chr14	qHI.SF-F2_ch14.2	QTL	94.5 cM	125.1 cM	-
Sic'on x F-177, F2 (2004).chr14	qHI.SF-F2_ch14.3	QTL	94.5 cM	125.1 cM	-
Sic'on x F-177, F2 (2004).chr18	qHI.SF-F2_ch18.1	QTL	33.4 cM	44.9 cM	-
Sic'on x F-177, F2 (2004).chr18	qHI.SF-F2_ch18.2	QTL	71.9 cM	93.2 cM	-
Sic'on x F-177, F2 (2004).chr02	qHI.SF-F2_ch02	QTL	14.4 cM	35.5 cM	-
Sic'on x F-177, F2 (2004).chr22	qHI.SF-F2_ch22	QTL	0 cM	21.7 cM	-
Sic'on x F-177, F2 (2004).chr26	qHI.SF-F2_ch26	QTL	27 cM	45.2 cM	-
Sic'on x F-177, F2 (2004).chr06	qHI.SF-F2_ch06	QTL	90.7 cM	172.1 cM	-
Sic'on x F-177, F2 (2004).chr08/lgA02	qHI.SF-F2_ch08	QTL	47.9 cM	77.7 cM	-
Sic'on x F-177, F2 (2004).chr09	qHI.SF-F2_ch09	QTL	20 cM	49.4 cM	-
Sic'on x F-177, F2 (2004).chr01	qOP.SF-F2_ch01	QTL	164.1 cM	181.2 cM	-
Sic'on x F-177, F2 (2004).chr13/lgA01.3	qOP.SF-F2_ch13	QTL	43.5 cM	56.2 cM	-
Sic'on x F-177, F2 (2004).chr14	qOP.SF-F2_ch14.1	QTL	0 cM	16.1 cM	-
Sic'on x F-177, F2 (2004).chr14	qOP.SF-F2_ch14.2	QTL	156.9 cM	173 cM	-

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Sic'on x F-177, F2 (2004)