Sic'on x F-177, F2 (2004)

Map Overview


Name	Sic'on x F-177, F2 (2004)
Species	Gossypium hirsutum x barbadense
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	Sic'on
Paternal parent	F-177
Population size	406
Number of loci	262
Number of QTL	175
Number of linkage groups	35
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

Sic'on x F-177, F2

population

Alias:	SF-F2
Description:	genetic mapping
Population size:	406
Secondary id:	cdbpop_000055
Pedigree:	Sic'on / F-177

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
2001	Saranga Y, Menz M, Jiang CX, Wright RJ, Yakir D, Paterson AH. Genomic dissection of genotype x environment interactions conferring adaptation of cotton to arid conditions. Genome research. 2001 Dec; 11(12):1988-95
2003	Paterson AH, Saranga Y, Menz M, Jiang CX, Wright RJ. QTL analysis of genotype x environment interactions affecting cotton fiber quality. Theoretical and applied genetics. 2003 Feb; 106(3):384-96
2004	Genetic dissection of cotton physiological responses to arid conditions and their inter-relationships with productivity.

Map Loci

This map contains 262 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Sic'on x F-177, F2 (2004).chr12	pAR0757	pAR0757	marker_locus	44.7 cM
Sic'on x F-177, F2 (2004).chr13/lgA01.1.1	A1552	A1552	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr13/lgA01.1.1	pAR0947	pAR0947	marker_locus	41.3 cM
Sic'on x F-177, F2 (2004).chr13/lgA01.1.2	P09-53	P09-53	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr13/lgA01.1.2	pAR0454	pAR0454	marker_locus	14.5 cM
Sic'on x F-177, F2 (2004).chr13/lgA01.1.3	pAR0923	pAR0923	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr13/lgA01.1.3	pAR0282	pAR0282	marker_locus	22.3 cM
Sic'on x F-177, F2 (2004).chr13/lgA01.1.3	G1258	G1258	marker_locus	54.4 cM
Sic'on x F-177, F2 (2004).chr13/lgA01.1.3	pAR04-39	pAR4-39	marker_locus	81.7 cM
Sic'on x F-177, F2 (2004).chr13/lgA01.1.3	G1125	G1125b	marker_locus	93.8 cM
Sic'on x F-177, F2 (2004).chr13/lgA01.1.3	P05-11	P05-11b	marker_locus	115.9 cM
Sic'on x F-177, F2 (2004).chr13/lgA01.1.3	PXP2-25	PXP2-25	marker_locus	153 cM
Sic'on x F-177, F2 (2004).chr13/lgA01.1.3	pAR0238	pAR0238	marker_locus	220.6 cM
Sic'on x F-177, F2 (2004).chr13/lgA01.1.3	A1208	A1208a	marker_locus	246.9 cM
Sic'on x F-177, F2 (2004).chr13/lgA01.1.3	pAR0338	pAR0338a	marker_locus	266.3 cM
Sic'on x F-177, F2 (2004).chr14	pAR0175	pAR0175	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr14	G1012	G1012	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr14	G1012	G1012	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr14	A1580	A1580	marker_locus	10.1 cM
Sic'on x F-177, F2 (2004).chr14	A1580	A1580	marker_locus	10.1 cM
Sic'on x F-177, F2 (2004).chr14	pAR0451	pAR0451	marker_locus	16.9 cM
Sic'on x F-177, F2 (2004).chr14	pAR0451	pAR0451	marker_locus	17.1 cM
Sic'on x F-177, F2 (2004).chr14	pAR0815	pAR0815	marker_locus	40.8 cM
Sic'on x F-177, F2 (2004).chr14	pAR0545	pAR0545b	marker_locus	45.4 cM
Sic'on x F-177, F2 (2004).chr14	pAR0545	pAR0545	marker_locus	45.4 cM

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Map QTL

This map contains 175 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Sic'on x F-177, F2 (2004).chr19/lgD08	qFL.SF-F2_ch19	QTL	186.1 cM	201.7 cM	-
Sic'on x F-177, F2 (2004).chr08/lgA02	qFL.SF-F2_ch08	QTL	112.4 cM	132.9 cM	-
Sic'on x F-177, F2 (2004).chr09	qFL.SF-F2_ch09	QTL	163.1 cM	177.9 cM	-
Sic'on x F-177, F2 (2004).chr01	qFS.SF-F2_ch01.1	QTL	118.9 cM	135.8 cM	-
Sic'on x F-177, F2 (2004).chr01	qFS.SF-F2_ch01.2	QTL	156.6 cM	189 cM	-
Sic'on x F-177, F2 (2004).chr11/lgA03	qFS.SF-F2_ch11	QTL	85.2 cM	116.1 cM	-
Sic'on x F-177, F2 (2004).chr13/lgA01.3	qFS.SF-F2_ch13	QTL	195.8 cM	241.4 cM	-
Sic'on x F-177, F2 (2004).chr14	qFS.SF-F2_ch14.1	QTL	45 cM	62.9 cM	-
Sic'on x F-177, F2 (2004).chr14	qFS.SF-F2_ch14.2	QTL	110.1 cM	128 cM	-
Sic'on x F-177, F2 (2004).chr14	qFS.SF-F2_ch14.3	QTL	110.1 cM	128 cM	-
Sic'on x F-177, F2 (2004).chr16	qFS.SF-F2_ch16	QTL	58.2 cM	71.7 cM	-
Sic'on x F-177, F2 (2004).chr17	qFS.SF-F2_ch17	QTL	0 cM	9.6 cM	-
Sic'on x F-177, F2 (2004).chr19/lgD08	qFS.SF-F2_ch19	QTL	0 cM	5.2 cM	-
Sic'on x F-177, F2 (2004).chr20	qFS.SF-F2_ch20	QTL	57.4 cM	90.6 cM	-
Sic'on x F-177, F2 (2004).chr21/lgD02	qFS.SF-F2_ch21	QTL	0 cM	37.9 cM	-
Sic'on x F-177, F2 (2004).chr22	qFS.SF-F2_ch22	QTL	0 cM	20 cM	-
Sic'on x F-177, F2 (2004).chr23	qFS.SF-F2_ch23	QTL	124 cM	153.8 cM	-
Sic'on x F-177, F2 (2004).chr24/lgD03	qFS.SF-F2_ch24.1	QTL	0 cM	9.4 cM	-
Sic'on x F-177, F2 (2004).chr24/lgD03	qFS.SF-F2_ch24.2	QTL	133.3 cM	155.5 cM	-
Sic'on x F-177, F2 (2004).chr25	qFS.SF-F2_ch25	QTL	76.2 cM	117.2 cM	-
Sic'on x F-177, F2 (2004).chr26.1	qFS.SF-F2_ch26	QTL	161.2 cM	179.7 cM	-
Sic'on x F-177, F2 (2004).chr04	qFS.SF-F2_ch04	QTL	55.8 cM	65 cM	-
Sic'on x F-177, F2 (2004).chr07	qFS.SF-F2_ch07	QTL	0 cM	31.8 cM	-
Sic'on x F-177, F2 (2004).chr08/lgA02	qFS.SF-F2_ch08	QTL	154.3 cM	200.4 cM	-
Sic'on x F-177, F2 (2004).chr11/lgA03	qFU.SF-F2_ch11	QTL	93.8 cM	133.8 cM	-

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Sic'on x F-177, F2 (2004)