Sic'on x F-177, F2 (2004)

Map Overview


Name	Sic'on x F-177, F2 (2004)
Species	Gossypium hirsutum x barbadense
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	Sic'on
Paternal parent	F-177
Population size	406
Number of loci	262
Number of QTL	175
Number of linkage groups	35
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

Sic'on x F-177, F2

population

Alias:	SF-F2
Description:	genetic mapping
Population size:	406
Secondary id:	cdbpop_000055
Pedigree:	Sic'on / F-177

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
2001	Saranga Y, Menz M, Jiang CX, Wright RJ, Yakir D, Paterson AH. Genomic dissection of genotype x environment interactions conferring adaptation of cotton to arid conditions. Genome research. 2001 Dec; 11(12):1988-95
2003	Paterson AH, Saranga Y, Menz M, Jiang CX, Wright RJ. QTL analysis of genotype x environment interactions affecting cotton fiber quality. Theoretical and applied genetics. 2003 Feb; 106(3):384-96
2004	Genetic dissection of cotton physiological responses to arid conditions and their inter-relationships with productivity.

Map Loci

This map contains 262 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Sic'on x F-177, F2 (2004).chr03	P09-53	P09-53	marker_locus	67.9 cM
Sic'on x F-177, F2 (2004).chr03	pGH550	PGH550	marker_locus	87.3 cM
Sic'on x F-177, F2 (2004).chr03	G1164	G1164	marker_locus	101.3 cM
Sic'on x F-177, F2 (2004).chr03	PXP3-89	PXP3-89	marker_locus	119 cM
Sic'on x F-177, F2 (2004).chr04	pAR0380	pAR0380a	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr04	pAR0138	pAR0138a	marker_locus	22.4 cM
Sic'on x F-177, F2 (2004).chr04	A1172	A1172	marker_locus	49.2 cM
Sic'on x F-177, F2 (2004).chr04	G1033	G1033a	marker_locus	58.4 cM
Sic'on x F-177, F2 (2004).chr04	pAR04-48	pAR4-48a	marker_locus	71.2 cM
Sic'on x F-177, F2 (2004).chr04	M16-125	M16-125b	marker_locus	86 cM
Sic'on x F-177, F2 (2004).chr05	G1112	G1112a	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr05	pAR01-28	pAR1-28	marker_locus	50 cM
Sic'on x F-177, F2 (2004).chr05	PXP1-09	pxp1-09	marker_locus	81.6 cM
Sic'on x F-177, F2 (2004).chr05	P12-20	P12-20	marker_locus	90.9 cM
Sic'on x F-177, F2 (2004).chr05	A1153	A1153	marker_locus	107.2 cM
Sic'on x F-177, F2 (2004).chr05	pAR0137	pAR0137	marker_locus	118.8 cM
Sic'on x F-177, F2 (2004).chr05	A1835	A1835	marker_locus	132.7 cM
Sic'on x F-177, F2 (2004).chr05	G1054	G1054	marker_locus	185.2 cM
Sic'on x F-177, F2 (2004).chr05	pAR0206	pAR0206b	marker_locus	246.5 cM
Sic'on x F-177, F2 (2004).chr05	A1535	A1535new	marker_locus	248 cM
Sic'on x F-177, F2 (2004).chr06	PXP4-69	pxp4-69	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr06	PXP4-08	pxp4-08	marker_locus	36.3 cM
Sic'on x F-177, F2 (2004).chr06	A1208	A1208b	marker_locus	67 cM
Sic'on x F-177, F2 (2004).chr06	pAR03-32	pAR3-32b	marker_locus	77.4 cM
Sic'on x F-177, F2 (2004).chr06	pGH663	pGH663	marker_locus	85.7 cM

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Map QTL

This map contains 175 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Sic'on x F-177, F2 (2004).chr14	qBWT.SF-F2_ch14.5	QTL	76 cM	120.4 cM	-
Sic'on x F-177, F2 (2004).chr14	qBWT.SF-F2_ch14.6	QTL	130.8 cM	150.1 cM	-
Sic'on x F-177, F2 (2004).chr02	qBWT.SF-F2_ch02.1	QTL	8.9 cM	35.5 cM	-
Sic'on x F-177, F2 (2004).chr02	qBWT.SF-F2_ch02.2	QTL	53.6 cM	85.9 cM	-
Sic'on x F-177, F2 (2004).chr21/lgD02	qBWT.SF-F2_ch21	QTL	23.5 cM	84.6 cM	-
Sic'on x F-177, F2 (2004).chr22	qBWT.SF-F2_ch22	QTL	0 cM	21.7 cM	-
Sic'on x F-177, F2 (2004).chr24/lgD03	qBWT.SF-F2_ch24	QTL	141.9 cM	163.8 cM	-
Sic'on x F-177, F2 (2004).chr25	qBWT.SF-F2_ch25	QTL	9 cM	30 cM	-
Sic'on x F-177, F2 (2004).chr26	qBWT.SF-F2_ch26	QTL	38.2 cM	62.6 cM	-
Sic'on x F-177, F2 (2004).chr03	qBWT.SF-F2_ch03	QTL	79.9 cM	101.3 cM	-
Sic'on x F-177, F2 (2004).chr05	qBWT.SF-F2_ch05	QTL	90.9 cM	115.7 cM	-
Sic'on x F-177, F2 (2004).chr09	qBWT.SF-F2_ch09	QTL	0.5 cM	31 cM	-
Sic'on x F-177, F2 (2004).chr12	qCHL-b.SF-F2_ch12	QTL	0 cM	15.4 cM	-
Sic'on x F-177, F2 (2004).chr26.1	qCHL-b.SF-F2_ch26	QTL	167.3 cM	186.9 cM	-
Sic'on x F-177, F2 (2004).chr26.1	qCHL-a.SF-F2_ch26	QTL	168.5 cM	186.9 cM	-
Sic'on x F-177, F2 (2004).chr08/lgA02	qCHL-a.SF-F2_ch08.1	QTL	103.9 cM	117.6 cM	-
Sic'on x F-177, F2 (2004).chr08/lgA02	qCHL-a.SF-F2_ch08.2	QTL	28 cM	56.1 cM	-
Sic'on x F-177, F2 (2004).chr08/lgA02	qCHL-b.SF-F2_ch08	QTL	28 cM	52.8 cM	-
Sic'on x F-177, F2 (2004).chr16	qCT.SF-F2_ch16.1	QTL	89.3 cM	124.3 cM	-
Sic'on x F-177, F2 (2004).chr16	qCT.SF-F2_ch16.2	QTL	154.4 cM	167.5 cM	-
Sic'on x F-177, F2 (2004).chr24/lgD03	qCT.SF-F2_ch24	QTL	33.1 cM	46.4 cM	-
Sic'on x F-177, F2 (2004).chr06	qCT.SF-F2_ch06	QTL	99.2 cM	132 cM	-
Sic'on x F-177, F2 (2004).chr10	qDM.SF-F2_ch10	QTL	126.8 cM	147.2 cM	-
Sic'on x F-177, F2 (2004).chr02	qDM.SF-F2_ch02	QTL	1.1 cM	16.6 cM	-
Sic'on x F-177, F2 (2004).chr22	qDM.SF-F2_ch22	QTL	71.8 cM	106.2 cM	-

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Sic'on x F-177, F2 (2004)