Sic'on x F-177, F2 (2004)

Map Overview


Name	Sic'on x F-177, F2 (2004)
Species	Gossypium hirsutum x barbadense
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	Sic'on
Paternal parent	F-177
Population size	406
Number of loci	262
Number of QTL	175
Number of linkage groups	35
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

Sic'on x F-177, F2

population

Alias:	SF-F2
Description:	genetic mapping
Population size:	406
Secondary id:	cdbpop_000055
Pedigree:	Sic'on / F-177

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
2001	Saranga Y, Menz M, Jiang CX, Wright RJ, Yakir D, Paterson AH. Genomic dissection of genotype x environment interactions conferring adaptation of cotton to arid conditions. Genome research. 2001 Dec; 11(12):1988-95
2003	Paterson AH, Saranga Y, Menz M, Jiang CX, Wright RJ. QTL analysis of genotype x environment interactions affecting cotton fiber quality. Theoretical and applied genetics. 2003 Feb; 106(3):384-96
2004	Genetic dissection of cotton physiological responses to arid conditions and their inter-relationships with productivity.

Map Loci

This map contains 262 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Sic'on x F-177, F2 (2004).chr17	pAR0172	pAR0172a	marker_locus	85.8 cM
Sic'on x F-177, F2 (2004).chr17	pGH399	pGH399a	marker_locus	94.7 cM
Sic'on x F-177, F2 (2004).chr17	pAR0250	pAR0250	marker_locus	102.5 cM
Sic'on x F-177, F2 (2004).chr17	A1683	A1683	marker_locus	135.3 cM
Sic'on x F-177, F2 (2004).chr18	A1552	A1552a	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr18	pAR0788	pAR0788	marker_locus	28.8 cM
Sic'on x F-177, F2 (2004).chr18	pAR04-13	pAR4-13	marker_locus	43.5 cM
Sic'on x F-177, F2 (2004).chr18	pAR0566	pAR0566a	marker_locus	49.7 cM
Sic'on x F-177, F2 (2004).chr18	A1647	A1647	marker_locus	67 cM
Sic'on x F-177, F2 (2004).chr18	G1125	G1125a	marker_locus	75.8 cM
Sic'on x F-177, F2 (2004).chr18	P05-11	P05-11a	marker_locus	101.4 cM
Sic'on x F-177, F2 (2004).chr19/lgD08	pGH225	pGH225	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr19/lgD08	pAR0065	PAR0065	marker_locus	8.6 cM
Sic'on x F-177, F2 (2004).chr19/lgD08	pAR0998	pAR0998	marker_locus	27.8 cM
Sic'on x F-177, F2 (2004).chr19/lgD08	pAR0825	pAR0825	marker_locus	60.4 cM
Sic'on x F-177, F2 (2004).chr19/lgD08	pAR0954	pAR0954	marker_locus	73.4 cM
Sic'on x F-177, F2 (2004).chr19/lgD08	G1112	G1112	marker_locus	83.2 cM
Sic'on x F-177, F2 (2004).chr19/lgD08	P02-09	P02-09	marker_locus	90 cM
Sic'on x F-177, F2 (2004).chr19/lgD08	G1112	G1112	marker_locus	93.7 cM
Sic'on x F-177, F2 (2004).chr19/lgD08	P03-04	P03-04	marker_locus	105.4 cM
Sic'on x F-177, F2 (2004).chr19/lgD08	pAR03-37	pAR3-37	marker_locus	143.2 cM
Sic'on x F-177, F2 (2004).chr19/lgD08	A1429	A1429	marker_locus	166.7 cM
Sic'on x F-177, F2 (2004).chr19/lgD08	pAR03-41	pAR3-41	marker_locus	199 cM
Sic'on x F-177, F2 (2004).chr19/lgD08	pAR0341	pAR03-41	marker_locus	203 cM
Sic'on x F-177, F2 (2004).chr19/lgD08	pAR1005	pAR1005	marker_locus	218.4 cM

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Map QTL

This map contains 175 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Sic'on x F-177, F2 (2004).chr14	qOP.SF-F2_ch14.3	QTL	156.9 cM	173 cM	-
Sic'on x F-177, F2 (2004).chr16	qOP.SF-F2_ch16	QTL	175.4 cM	181.1 cM	-
Sic'on x F-177, F2 (2004).chr19/lgD08	qOP.SF-F2_ch19	QTL	176.5 cM	176.8 cM	-
Sic'on x F-177, F2 (2004).chr20	qOP.SF-F2_ch20	QTL	91.5 cM	118 cM	-
Sic'on x F-177, F2 (2004).chr21/lgD02	qOP.SF-F2_ch21	QTL	177.7 cM	199.3 cM	-
Sic'on x F-177, F2 (2004).chr25	qOP.SF-F2_ch25	QTL	75.8 cM	101.8 cM	-
Sic'on x F-177, F2 (2004).chr06	qOP.SF-F2_ch06	QTL	101.1 cM	117.8 cM	-
Sic'on x F-177, F2 (2004).chr07	qOP.SF-F2_ch07	QTL	0 cM	31.2 cM	-
Sic'on x F-177, F2 (2004).chr08/lgA02	qOP.SF-F2_ch08	QTL	32.9 cM	56.1 cM	-
Sic'on x F-177, F2 (2004).chr11/lgA03	qSCY.SF-F2_ch11.1	QTL	84.6 cM	112.9 cM	-
Sic'on x F-177, F2 (2004).chr11/lgA03	qSCY.SF-F2_ch11.2	QTL	0 cM	6.2 cM	-
Sic'on x F-177, F2 (2004).chr14	qSCY.SF-F2_ch14.1	QTL	58.5 cM	91.5 cM	-
Sic'on x F-177, F2 (2004).chr14	qSCY.SF-F2_ch14.2	QTL	81.5 cM	114.5 cM	-
Sic'on x F-177, F2 (2004).chr14	qSCY.SF-F2_ch14.3	QTL	81.5 cM	114.5 cM	-
Sic'on x F-177, F2 (2004).chr15	qSCY.SF-F2_ch15	QTL	5.2 cM	24.3 cM	-
Sic'on x F-177, F2 (2004).chr18	qSCY.SF-F2_ch18.1	QTL	33.4 cM	47.4 cM	-
Sic'on x F-177, F2 (2004).chr18	qSCY.SF-F2_ch18.2	QTL	80.1 cM	96.5 cM	-
Sic'on x F-177, F2 (2004).chr02	qSCY.SF-F2_ch02	QTL	14.4 cM	27.7 cM	-
Sic'on x F-177, F2 (2004).chr22	qSCY.SF-F2_ch22	QTL	0 cM	27.5 cM	-
Sic'on x F-177, F2 (2004).chr25	qSCY.SF-F2_ch25	QTL	90 cM	110.1 cM	-
Sic'on x F-177, F2 (2004).chr04	qSCY.SF-F2_ch04	QTL	54.5 cM	65.7 cM	-
Sic'on x F-177, F2 (2004).chr06	qSCY.SF-F2_ch06.1	QTL	37.9 cM	55.7 cM	-
Sic'on x F-177, F2 (2004).chr06	qSCY.SF-F2_ch06.2	QTL	94.2 cM	109.6 cM	-
Sic'on x F-177, F2 (2004).chr07.2	qSCY.SF-F2_ch07	QTL	29.8 cM	46.4 cM	-
Sic'on x F-177, F2 (2004).chr08/lgA02	qSCY.SF-F2_ch08	QTL	47.9 cM	76 cM	-

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Sic'on x F-177, F2 (2004)