pAR0954, pAR0954 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepAR0954
Genbank IDCA993609
TypeRFLP
SpeciesGossypium hirsutum
GermplasmT-25
Source TypecDNA
Restriction EnzymeEcoR1; Xho1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993609
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:7802342..7803085 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:8592465..8593210 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:7223228..7223972 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:8358554..8359299 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:8458656..8459401 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:53562230..53562974 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:12092997..12093742 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:62376315..62377058 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:53606685..53607199 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:7603591..7604334 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:7880157..7880902 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:7632701..7633444 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:8564193..8564937 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:7403806..7404549 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:8345068..8345813 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:7566172..7566914 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:8566934..8567679 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:7427596..7428340 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:8948562..8949307 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:6502537..6503282 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7102supercontigscaffold7102:77141..77886 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:7565915..7566659 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:8058489..8059234 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:7659111..7659855 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:8623666..8624411 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:7539249..7539993 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:8486391..8487136 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:7809023..7809767 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:8618499..8619244 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:7478521..7479265 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:8373696..8374441 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:7611257..7612000 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:8742917..8743662 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:9087781..9088526 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:8337194..8337939 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:6978394..6979138 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:77808184..77808933 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:7172354..7173094 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:6698294..6699327 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:6722298..6723042 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:7449038..7449782 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:6670992..6671737 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:5532180..5532933 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:6515557..6516302 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:9018130..9018855 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:7340253..7341008 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomepAR0954:1..746 .
Chr09:6931410..6932154 -		n/a
Chr9chromosomepAR0954:1..746 .
Chr9:11854108..11854852 -		n/a
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CAMD-E x Seaberry, F2 (1998)AD_ch19_Dt.05N/A93.7pAR0954View
2Deltapine-61 x Seaberry, F2 (2000)AD_ch19_Dt.05N/A54.7pAR0954View
3Pima S-7 x Empire, F2 (2007)AD_ch19_Dt.05N/A4.1pAR0954View
4AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A75pAR0954View
5AD-genome wide Reference Map (2009)AD_ch05_At.05N/A65pAR0954View
6Sic'on x F-177, F2 (2004)AD_ch19_Dt.05N/A73.4pAR0954View
7TM-1 x WT-936, F2 (2005)AD_ch05_At.05N/A39.4pAR0954View
8Palmeri x K-101, F2 (2007)AD_ch19_Dt.05N/A56.1pAR954View
Sequence
>pAR0954 ID=pAR0954; Name=pAR0954; organism=Gossypium hirsutum; type=genetic_marker; length=746bp
ATAAAATTGAGATATTTATTTTGATTACAGATACATAAAAGACCAAACTA
CAAAACGAAGACCATTACAAATCACAACGTTATTTAAAACTTTTATACAT
ACATACGTAAACACACATATAGTATAGATCGCGCATAGTGGGAACTGAAC
TCTGATCTGGCAGTGTTAAAAGACACGGTTTAGAAACCAAAGTTCAATCG
TTTAGCCAGAAATGTCAATAGCCTTGACATCGGGCTTTTTCACTTCCAGT
TTGGGAACAGTGACAGTAAGCACACCATTTTCCATGGAAGCCTTGATCTG
ATCCATCTTAGCATTCTCAGGCAACCTGAACCTCCTCATAAACTTCCCAC
TGCTACGTTCCACGCGATGCCATGTGTCATTCTTGTCTTCCTTCTCCATG
TTCCTCTCTCCGCTTATCTGAAGCACCCTGTCATCTTCAACCTCCACTTT
GACCTCTTCTTTCTTAAGCCCCGGAACATCAGCCTTGAACACGTGCGCTT
CTGGGGTTTCTTTCCAGTCAATTCGGGTATTCACAAACGCTGAGGTTTCC
GGGGTTTGTGAGGTGAGTGAAGAAGAAAGGGGGAAGTCCTTGAAAGGATC
CCATACATCAAGAGAGAAAGGATCAAAGACATTGCTGCGGCGGCTGCCAT
AAAAGCTTGGAATCATAGCCATTTTCACAATAGAAAACTGGGATTAACAG
GAAAATTGGATTATGATATTTTGGGAGATTGAGAGACTCGTCTTGG