Sic'on x F-177, F2 (2004)

Map Overview


Name	Sic'on x F-177, F2 (2004)
Species	Gossypium hirsutum x barbadense
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	Sic'on
Paternal parent	F-177
Population size	406
Number of loci	262
Number of QTL	175
Number of linkage groups	35
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

Sic'on x F-177, F2

population

Alias:	SF-F2
Description:	genetic mapping
Population size:	406
Secondary id:	cdbpop_000055
Pedigree:	Sic'on / F-177

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
2001	Saranga Y, Menz M, Jiang CX, Wright RJ, Yakir D, Paterson AH. Genomic dissection of genotype x environment interactions conferring adaptation of cotton to arid conditions. Genome research. 2001 Dec; 11(12):1988-95
2003	Paterson AH, Saranga Y, Menz M, Jiang CX, Wright RJ. QTL analysis of genotype x environment interactions affecting cotton fiber quality. Theoretical and applied genetics. 2003 Feb; 106(3):384-96
2004	Genetic dissection of cotton physiological responses to arid conditions and their inter-relationships with productivity.

Map Loci

This map contains 262 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Sic'on x F-177, F2 (2004).chr06	pAR0717	pAR0717	marker_locus	89.5 cM
Sic'on x F-177, F2 (2004).chr06	pAR0936	pAR0936	marker_locus	100.1 cM
Sic'on x F-177, F2 (2004).chr06	pAR03-32	pAR3-32a	marker_locus	107.2 cM
Sic'on x F-177, F2 (2004).chr06	G1099	G1099b	marker_locus	141.9 cM
Sic'on x F-177, F2 (2004).chr06	pAR0940	PAR0940	marker_locus	187.7 cM
Sic'on x F-177, F2 (2004).chr07	pAR0188	pAR0188	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr07	A1826	A1826	marker_locus	43.3 cM
Sic'on x F-177, F2 (2004).chr07.1	pAR0173	PAR0173	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr07.1	pAR0319	pAR0319	marker_locus	18.4 cM
Sic'on x F-177, F2 (2004).chr07.1	pAR0820	pAR0820	marker_locus	41.1 cM
Sic'on x F-177, F2 (2004).chr07.1	pAR04-14	pAR4-14	marker_locus	60.2 cM
Sic'on x F-177, F2 (2004).chr07.1	A1182	A1182	marker_locus	75 cM
Sic'on x F-177, F2 (2004).chr07.1	G1185	G1185	marker_locus	99.6 cM
Sic'on x F-177, F2 (2004).chr07.1	G1158	G1158	marker_locus	129.7 cM
Sic'on x F-177, F2 (2004).chr07.2	pAR0825	pAR0825	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr07.2	A1182	A1182	marker_locus	21.8 cM
Sic'on x F-177, F2 (2004).chr07.2	pAR0624	pAR0624	marker_locus	34 cM
Sic'on x F-177, F2 (2004).chr07.2	pAR0564	pAR0564	marker_locus	53 cM
Sic'on x F-177, F2 (2004).chr07.2	G1158	G1158	marker_locus	95.5 cM
Sic'on x F-177, F2 (2004).chr08/lgA02	G1114	G1114	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr08/lgA02	pAR0792	pAR0792	marker_locus	23 cM
Sic'on x F-177, F2 (2004).chr08/lgA02	A1679	A1679	marker_locus	45.7 cM
Sic'on x F-177, F2 (2004).chr08/lgA02	pVNC244	pVNC244c	marker_locus	56.9 cM
Sic'on x F-177, F2 (2004).chr08/lgA02	pGH244	pGH244	marker_locus	89.6 cM
Sic'on x F-177, F2 (2004).chr08/lgA02	pGH530	pGH530new	marker_locus	126 cM

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Map QTL

This map contains 175 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Sic'on x F-177, F2 (2004).chr09	qDM.SF-F2_ch09	QTL	0 cM	15.3 cM	-
Sic'on x F-177, F2 (2004).chr13/lgA01.1	qSDFZCL.SF-F2_ch13.1	QTL	0 cM	31.3 cM	-
Sic'on x F-177, F2 (2004).chr13/lgA01.3	qSDFZCL.SF-F2_ch13.2	QTL	82.9 cM	103.4 cM	-
Sic'on x F-177, F2 (2004).chr14	qSDFZCL.SF-F2_ch14.1	QTL	12.8 cM	25 cM	-
Sic'on x F-177, F2 (2004).chr14	qSDFZCL.SF-F2_ch14.2	QTL	12.8 cM	25 cM	-
Sic'on x F-177, F2 (2004).chr14	qSDFZCL.SF-F2_ch14.3	QTL	148 cM	160.2 cM	-
Sic'on x F-177, F2 (2004).chr17	qSDFZCL.SF-F2_ch17	QTL	4.1 cM	9.6 cM	-
Sic'on x F-177, F2 (2004).chr21/lgD02	qSDFZCL.SF-F2_ch21	QTL	0 cM	25.8 cM	-
Sic'on x F-177, F2 (2004).chr25	qSDFZCL.SF-F2_ch25	QTL	112.7 cM	123.2 cM	-
Sic'on x F-177, F2 (2004).chr06	qSDFZCL.SF-F2_ch06.1	QTL	36.3 cM	62.5 cM	-
Sic'on x F-177, F2 (2004).chr06	qSDFZCL.SF-F2_ch06.2	QTL	92.8 cM	141.9 cM	-
Sic'on x F-177, F2 (2004).chr07	qSDFZCL.SF-F2_ch07	QTL	0 cM	26 cM	-
Sic'on x F-177, F2 (2004).chr08/lgA02	qSDFZCL.SF-F2_ch08	QTL	93 cM	115.2 cM	-
Sic'on x F-177, F2 (2004).chr09	qSDFZCL.SF-F2_ch09	QTL	16.4 cM	92.3 cM	-
Sic'on x F-177, F2 (2004).chr14	qFEL.SF-F2_ch14.1	QTL	49.6 cM	99 cM	-
Sic'on x F-177, F2 (2004).chr14	qFEL.SF-F2_ch14.2	QTL	74 cM	123.4 cM	-
Sic'on x F-177, F2 (2004).chr14	qFEL.SF-F2_ch14.3	QTL	74 cM	123.4 cM	-
Sic'on x F-177, F2 (2004).chr15	qFEL.SF-F2_ch15	QTL	124.5 cM	170.7 cM	-
Sic'on x F-177, F2 (2004).chr22	qFEL.SF-F2_ch22.1	QTL	56.2 cM	78.9 cM	-
Sic'on x F-177, F2 (2004).chr22	qFEL.SF-F2_ch22.2	QTL	147.6 cM	163.9 cM	-
Sic'on x F-177, F2 (2004).chr23	qFEL.SF-F2_ch23.1	QTL	24.7 cM	43.6 cM	-
Sic'on x F-177, F2 (2004).chr23	qFEL.SF-F2_ch23.2	QTL	97 cM	126.9 cM	-
Sic'on x F-177, F2 (2004).chr05	qFEL.SF-F2_ch05	QTL	141.1 cM	175.3 cM	-
Sic'on x F-177, F2 (2004).chr08/lgA02	qFEL.SF-F2_ch08	QTL	25.7 cM	50.1 cM	-
Sic'on x F-177, F2 (2004).chr12	qFF.SF-F2_ch12	QTL	0 cM	20.7 cM	-

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Sic'on x F-177, F2 (2004)