A1679, A1679 (genetic_marker) Gossypium herbaceum

Marker Overview
NameA1679
Genbank IDCK640438
TypeRFLP
SpeciesGossypium herbaceum
GermplasmM-881-8
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCK640438
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:65376684..65377451 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:119533304..119534071 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:61561771..61562538 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:114540166..114540933 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:57676453..57677256 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:124573636..124574402 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:3661483..3662250 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr12chromosomeDt_chr12:10947272..10948039 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:52755053..52755820 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:62125813..62126580 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:99623012..99623779 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:64513893..64514660 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:118047288..118048050 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:64924531..64925298 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:120706214..120706981 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:64368928..64369695 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:120884924..120885691 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:61659766..61660533 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:116612499..116613266 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt08chromosomeDt08:64537727..64538494 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20537supercontigscaffold20537:37915..38682 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold193supercontigscaffold193:190580..191347 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:61676718..61677485 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:115200022..115200789 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:63489354..63490121 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:116175650..116176417 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:63295460..63296227 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:114786214..114786981 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:65408294..65409061 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:124281216..124281983 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:62002300..62003067 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:115365817..115366584 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:65154894..65155661 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:122781315..122782082 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:127060297..127061061 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:128023831..128024597 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:58588566..58589370 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:99699379..99700147 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:60100109..60100876 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:45411005..45411772 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:42359551..42360318 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:62454941..62455708 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:39745196..39745963 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:33567842..33568599 +Gossypium gossypioides (D6) genome ISU_v1n/a
E08chromosomeE08:117320787..117321511 +Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:100732426..100733210 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:5851265..5852029 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr04chromosomeA1679:1..765 .
Chr04:58166578..58167382 +		n/a
Chr4chromosomeA1679:1..765 .
Chr4:2544719..2545523 +		n/a
Germplasm
Stock NameType
M-881-8accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CAMD-E x Seaberry, F2 (1998)AD_ch08_At.08N/A44.2A1679aView
2CAMD-E x Seaberry, F2 (1998)AD_ch08_At.08N/A47.4A1679bView
3Deltapine-61 x Seaberry, F2 (2000)AD_ch08_At.08N/A0A1679View
4Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch08_At.08N/A56.4A1679View
5Guazuncho-2 x VH8-4602, consensus (2009)AD_ch08_At.08N/A32.82A1679View
6Palmeri x K-101, F2 (2007)AD_ch08_At.08N/A41.3A1679View
7Pima S-7 x Empire, F2 (2007)AD_ch08_At.08N/A27.9A1679View
8AD-genome wide Reference Map (2009)AD_ch08_At.08N/A37A1679View
9Sic'on x F-177, F2 (2004)AD_ch08_At.08N/A45.7A1679View
10TM-1 x WT-936, F2 (2005)AD_ch08_At.08N/A45.1A1679View
Sequence
>A1679 ID=A1679; Name=A1679; organism=Gossypium herbaceum; type=genetic_marker; length=765bp
CATTTCCTTCTTTGCATTTATTGGATTGGTTCTTGCTGGAAGATTGAAAG
AATTGAAAGTTGTATATATTTTAACGGGTATGATTGATTCAGACTTACGT
TTTCTAGTTTATTAATGATTTACAAACTAAACTTTCCGGGCCATTTTTTT
GTTAATTTTATTATGGTGTAGAAAATTCGTTTTGTATTTTAGCCCCTCAT
ATTGTACAGGCAAGTGCATTAGTTTTTAGACATTTTCTTTTTCTGCTTTA
CGTATAGGATCTTGCTGCTAATATTTTGAGTTTAATACATTGTCTTCTAT
TTTCCAGCAGTGGCTATTAGGCTCGCATGACACTCAAATCCCTCTTAGGG
TGTTTATGGCTATAGTTTTGATCTTGTTGACGGGTTTTTTTGCTTATCCT
GCTAACCTTTGTCTCATAAACACTTCAACAAATGAGGTCAGATCTGTTTC
AATCTTGTTCTGCTGTTCCTTTTTTTGGTACCTTAAGTTGACATTGCTAA
CTAGCACTGGCGATTACCATAATTTGGCAACCTAGCCTCCGTTGAACATA
AACCCGGAAATACTTTTCTATGCCGATTATTAAGTCGTAAGTGAAACTAT
GAAACTAGAACCGAATGTTGTCATCTTTCTGAGGCAATCCAGCCTTGACC
TAAGATAAACCCTGAACTACTTTGCTATACAGATCGTTATGTTAAAGAAA
CCATGAAACTAGAATCAGATGTTCTCATCTATCCGAAGCAGGTTTGCCTT
GACCGTACATAAACC