A1826, A1826 (genetic_marker) Gossypium herbaceum

Marker Overview
NameA1826
Genbank IDCK640457
TypeRFLP
SpeciesGossypium herbaceum
GermplasmM-881-8
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCK640457
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:57398576..57398793 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:93093762..93093979 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:55309893..55310110 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:93090435..93090652 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:50756891..50757107 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_07chromosomeKI_07:810826..811043 -Gossypioides kirkii genome ISU_v3n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:96798755..96798972 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:2170264..2170481 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:1100207..1100424 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1805.1supercontigscaffold1805.1:343665..343882 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:44401828..44402045 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:54572649..54572866 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:77580546..77580763 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:58474632..58474849 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:97024396..97024613 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:57712481..57712698 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:95932915..95933132 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:58103223..58103440 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:96037265..96037482 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:54410481..54410698 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:92557777..92557994 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt07chromosomeDt07:60408398..60408615 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10895supercontigscaffold10895:128962..129179 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10895supercontigscaffold10895:127364..127581 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold16888supercontigscaffold16888:148734..148951 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:55699894..55700111 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:92082732..92082949 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:56303309..56303526 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:94369713..94369930 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:56315267..56315484 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:96067673..96067890 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:57298315..57298897 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:98971540..98971757 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:56336742..56336959 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:94410330..94410547 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:58695100..58695317 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:98214520..98214737 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:99991137..99991354 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:101355242..101355459 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:705401..705617 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:80744621..80744838 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:55296158..55296375 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:44837444..44837661 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:39776043..39776260 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:55125533..55125750 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:41858872..41859089 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:32538445..32538662 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:40471330..40471547 -Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:2241702..2241919 -Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:81656159..81656376 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:157080467..157080684 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr01chromosomeA1826:7..225 .
Chr01:54814526..54814742 -		n/a
Chr1chromosomeA1826:7..225 .
Chr1:2634166..2634382 +		n/a
Germplasm
Stock NameType
M-881-8accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1A1-97 x A2-47, F2 (1999)A_AA_lg15N/A11A1826View
2CAMD-E x Seaberry, F2 (1998)AD_ch07_At.07N/A0A1826View
3Gtr x Gra, F2 (2004)D.07N/A33.3A1826View
4Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch16_Dt.07N/A27.2A1826View
5Guazuncho-2 x VH8-4602, consensus (2009)AD_ch16_Dt.07N/A12.82A1826View
6Palmeri x K-101, F2 (2007)AD_ch07_At.07N/A7.8A1826View
7AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A183A1826View
8AD-genome wide Reference Map (2009)AD_ch07_At.07N/A2A1826View
9Sic'on x F-177, F2 (2004)AD_ch07_At.07N/A43.3A1826View
Sequence
>A1826 ID=A1826; Name=A1826; organism=Gossypium herbaceum; type=genetic_marker; length=225bp
CATTAACATGGGGCACAAAGAATCGCTTGGAGCTTATATATTTGATTGTC
CCAACCACAGCCCATTTTCTTAACGGTGATTGAACTGGACTTAATGCAGA
ATCAAGTAGAATCCCCTCAGTGGAGTTGCTTAAGAATTCAGGGCCAAATT
CGAATCCTCCATTCAGCAACAGGTTATCTGTGTCCAACAAGAAATATGCA
AAGCTGTTAGGGAGGATAATGGAAA