Sic'on x F-177, F2 (2004)

Map Overview


Name	Sic'on x F-177, F2 (2004)
Species	Gossypium hirsutum x barbadense
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	Sic'on
Paternal parent	F-177
Population size	406
Number of loci	262
Number of QTL	175
Number of linkage groups	35
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

Sic'on x F-177, F2

population

Alias:	SF-F2
Description:	genetic mapping
Population size:	406
Secondary id:	cdbpop_000055
Pedigree:	Sic'on / F-177

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
2001	Saranga Y, Menz M, Jiang CX, Wright RJ, Yakir D, Paterson AH. Genomic dissection of genotype x environment interactions conferring adaptation of cotton to arid conditions. Genome research. 2001 Dec; 11(12):1988-95
2003	Paterson AH, Saranga Y, Menz M, Jiang CX, Wright RJ. QTL analysis of genotype x environment interactions affecting cotton fiber quality. Theoretical and applied genetics. 2003 Feb; 106(3):384-96
2004	Genetic dissection of cotton physiological responses to arid conditions and their inter-relationships with productivity.

Map Loci

This map contains 262 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Sic'on x F-177, F2 (2004).chr08/lgA02	pAR0118	pAR0118	marker_locus	139.4 cM
Sic'on x F-177, F2 (2004).chr08/lgA02	pGH318	pGH318b	marker_locus	154.3 cM
Sic'on x F-177, F2 (2004).chr08/lgA02	G1276	G1276a	marker_locus	207.4 cM
Sic'on x F-177, F2 (2004).chr09	pAR0288	pAR0288	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr09	A1737	A1737a	marker_locus	19.4 cM
Sic'on x F-177, F2 (2004).chr09	A1270	A1270b	marker_locus	82.3 cM
Sic'on x F-177, F2 (2004).chr09	A1471	A1471b	marker_locus	113.7 cM
Sic'on x F-177, F2 (2004).chr09	pARC-15	pARC-15	marker_locus	133.5 cM
Sic'on x F-177, F2 (2004).chr09	P10-62	P10-62	marker_locus	145.5 cM
Sic'on x F-177, F2 (2004).chr09	A1707	A1707a	marker_locus	177.9 cM
Sic'on x F-177, F2 (2004).chr10	A1158	A1158a	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr10	G1272	G1272	marker_locus	30 cM
Sic'on x F-177, F2 (2004).chr10	G1257	G1257	marker_locus	61.1 cM
Sic'on x F-177, F2 (2004).chr10	pVNC163	PVNC163b	marker_locus	100.1 cM
Sic'on x F-177, F2 (2004).chr10	Gate4CA04	Gate4CA04	marker_locus	113.4 cM
Sic'on x F-177, F2 (2004).chr10	Gate4CA04	Gate4CA04	marker_locus	117.6 cM
Sic'on x F-177, F2 (2004).chr10	pAR0566	pAR0566b	marker_locus	147.2 cM
Sic'on x F-177, F2 (2004).chr11/lgA03	pAR0101	pAR0101a	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr11/lgA03	pAR0044	pAR0044	marker_locus	18.3 cM
Sic'on x F-177, F2 (2004).chr11/lgA03	pAR0111	pAR0111	marker_locus	33.1 cM
Sic'on x F-177, F2 (2004).chr11/lgA03	pGH782	PGH782	marker_locus	68.1 cM
Sic'on x F-177, F2 (2004).chr11/lgA03	pAR0570	pAR0570a	marker_locus	119 cM
Sic'on x F-177, F2 (2004).chr11/lgA03	G1199	G1199	marker_locus	139.5 cM
Sic'on x F-177, F2 (2004).chr12	pAR03-42	pAR3-42	marker_locus	0 cM
Sic'on x F-177, F2 (2004).chr12	A1210	A1210	marker_locus	33.1 cM

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Map QTL

This map contains 175 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Sic'on x F-177, F2 (2004).chr13/lgA01.3	qFF.SF-F2_ch13.1	QTL	88.9 cM	105.8 cM	-
Sic'on x F-177, F2 (2004).chr13/lgA01.3	qFF.SF-F2_ch13.2	QTL	252.5 cM	266.3 cM	-
Sic'on x F-177, F2 (2004).chr15	qFF.SF-F2_ch15.1	QTL	102.7 cM	126.2 cM	-
Sic'on x F-177, F2 (2004).chr15	qFF.SF-F2_ch15.2	QTL	205.1 cM	235 cM	-
Sic'on x F-177, F2 (2004).chr16	qFF.SF-F2_ch16	QTL	33.7 cM	48.9 cM	-
Sic'on x F-177, F2 (2004).chr17	qFF.SF-F2_ch17	QTL	105.1 cM	124 cM	-
Sic'on x F-177, F2 (2004).chr19/lgD08	qFF.SF-F2_ch19	QTL	0 cM	4.7 cM	-
Sic'on x F-177, F2 (2004).chr02	qFF.SF-F2_ch02	QTL	40.9 cM	52.7 cM	-
Sic'on x F-177, F2 (2004).chr20	qFF.SF-F2_ch20	QTL	117.5 cM	131.2 cM	-
Sic'on x F-177, F2 (2004).chr21/lgD02	qFF.SF-F2_ch21	QTL	69.9 cM	93.9 cM	-
Sic'on x F-177, F2 (2004).chr22	qFF.SF-F2_ch22.1	QTL	41.2 cM	62.8 cM	-
Sic'on x F-177, F2 (2004).chr22	qFF.SF-F2_ch22.2	QTL	186.3 cM	204 cM	-
Sic'on x F-177, F2 (2004).chr23	qFF.SF-F2_ch23	QTL	88.8 cM	151.4 cM	-
Sic'on x F-177, F2 (2004).chr24/lgD03	qFF.SF-F2_ch24.1	QTL	13.4 cM	50.5 cM	-
Sic'on x F-177, F2 (2004).chr24/lgD03	qFF.SF-F2_ch24.2	QTL	136.1 cM	161 cM	-
Sic'on x F-177, F2 (2004).chr25	qFF.SF-F2_ch25	QTL	141.3 cM	172 cM	-
Sic'on x F-177, F2 (2004).chr03	qFF.SF-F2_ch03	QTL	39 cM	87.3 cM	-
Sic'on x F-177, F2 (2004).chr04	qFF.SF-F2_ch04	QTL	17.8 cM	38.3 cM	-
Sic'on x F-177, F2 (2004).chr05	qFF.SF-F2_ch05.1	QTL	20.8 cM	54.8 cM	-
Sic'on x F-177, F2 (2004).chr05	qFF.SF-F2_ch05.2	QTL	147.5 cM	166.8 cM	-
Sic'on x F-177, F2 (2004).chr07.2	qFF.SF-F2_ch07	QTL	34 cM	95.5 cM	-
Sic'on x F-177, F2 (2004).chr09	qFF.SF-F2_ch09	QTL	140.9 cM	160.7 cM	-
Sic'on x F-177, F2 (2004).chr11/lgA03	qFL.SF-F2_ch11	QTL	88.1 cM	123.8 cM	-
Sic'on x F-177, F2 (2004).chr13/lgA01.3	qFL.SF-F2_ch13	QTL	249.7 cM	266.3 cM	-
Sic'on x F-177, F2 (2004).chr16	qFL.SF-F2_ch16	QTL	48.9 cM	59.8 cM	-

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Sic'on x F-177, F2 (2004)