pAR0137, pAR0137 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepAR0137
Genbank IDCA992740
TypeRFLP
SpeciesGossypium hirsutum
GermplasmT-25
Source TypecDNA
Restriction EnzymeEcoR1; Xho1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA992740
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:21942760..21943375 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:23905697..23906312 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:20789508..20790123 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:22985893..22986508 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_05chromosomeKI_05:17415601..17416216 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:23670409..23671023 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:40927816..40928430 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:88634024..88634634 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold3765.1supercontigscaffold3765.1:73650..74265 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:21374187..21374802 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:21287450..21288065 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:23531780..23532395 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:20761691..20762306 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:22859911..22860526 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:21125805..21126420 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:23586977..23587592 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:21007234..21007849 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:23731445..23732060 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt05chromosomeDt05:21695880..21696495 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At05chromosomeAt05:18611792..18612407 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold999supercontigscaffold999:219492..220107 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17353supercontigscaffold17353:9098..9713 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:21066672..21067287 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:22660035..22660650 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:21063078..21063693 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:23343038..23343653 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:20958209..20958824 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:23185269..23185884 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:21359211..21359826 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:23513986..23514601 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:21017693..21018308 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:22893813..22894428 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:21602698..21603313 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:23944221..23944836 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:25194471..25195086 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:23592307..23592921 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:19566700..19567315 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:63011381..63011996 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:20081264..20081876 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:17980336..17981053 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr09_4326622chromosomeChr09_4326622:1337..1951 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:20732130..20732742 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09_2649215chromosomeChr09_2649215:1580..2193 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:14845133..14845742 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:17263301..17263916 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:25570917..25571532 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:20172530..20173145 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:106238819..106239434 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr09chromosomepAR0137:1..616 .
Chr09:19409766..19410381 -		n/a
Chr9chromosomepAR0137:1..616 .
Chr9:25637834..25638449 -		n/a
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CAMD-E x Seaberry, F2 (1998)AD_ch05_At.05N/A72.4pAR0137View
2AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A183pAR0137View
3AD-genome wide Reference Map (2009)AD_ch05_At.05N/A123pAR0137View
4Sic'on x F-177, F2 (2004)AD_ch05_At.05N/A118.8pAR0137View
5Palmeri x K-101, F2 (2007)AD_ch05_At.05N/A112.8pAR137aView
6Palmeri x K-101, F2 (2007)AD_ch19_Dt.05N/A128pAR137bView
7Pima S-7 x Empire, F2 (2007)AD_ch05_At.05N/A127.1pAR0137aView
8Pima S-7 x Empire, F2 (2007)AD_ch19_Dt.05N/A50pAR0137bView
Sequence
>pAR0137 ID=pAR0137; Name=pAR0137; organism=Gossypium hirsutum; type=genetic_marker; length=621bp
AATATTAATGTTTCTTGACTGATCTTTATTCCCATGCATGGAAATACCGC
AGCACCCAAGGCGCATATATAGAGAAAACTTAAGTTTAATAATCTAAAAT
AAGGAATTAATTATGAGTCTGAAGTCCTCCAAGCTAACAGCTCCATCACC
ATCAGCATCCATGGAGGCAATAACACTCTGGCAATCCTCCAAGGAAAGCT
GATCGATGCCAAGGTTCCCCATAACCTCATACAAGTCGGCAGCAGTCAAA
GCATCATCCCCTTCGACTTCAAAAGCTTGGAAAGCGGTCCTGAGGAAATT
GGCAAGCTCCCCAAGCTCCATGTCCTTGGTGTTCATCTCTAGGAACTCTT
CCATGCTCAGTAATCCGTCCTTGTTGGCGTCCCCTTCTCGCATCATGGCC
CTCACGTCTTGCTCGCTAGCGTTGTACCCCAGCGAACTCAGGATTCCCCC
TAGCTCTGCAGCATTGATTGCGCCATCGTTGTCTGAATCAAATGCTCTGA
AGGCCTCCACCAGGCTTAGGACATTGCTCAGTGTCTCGGTTTCTGCTGAC
AGAGACGACCCTAGTTGAGCCATAGATTGGTGCTTATTAATTTATATATT
TAAATTTATAGATACTCGTGC