pAR0906, pAR0906 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepAR0906
Genbank IDCA993584
TypeRFLP
SpeciesGossypium hirsutum
GermplasmT-25
Source TypecDNA
Restriction EnzymeEcoR1; Xho1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993584
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:91876456..91876958 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:101111371..101111873 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:86683229..86683732 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:59843748..59844250 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:88012308..88012810 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:105513836..105514338 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:106220903..106221613 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:103739595..103740097 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:100620600..100621102 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold16990supercontigscaffold16990:20019..20520 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A01chromosomeGbar_A01:103612739..103613241 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:103691064..103691723 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:102217064..102217569 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:109576677..109577178 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:99876984..99877485 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:107192938..107193440 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:38432285..38432740 -Gossypium aridum (D4) genome ISU_v1n/a
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Palmeri x K-101, F2 (2007)AD_ch15_Dt.01N/A59.1pAR906View
2Sic'on x F-177, F2 (2004)AD_ch15_Dt.01N/A63.2par0906View
3TM-1 x WT-936, F2 (2005)AD_ch15_Dt.01N/A79.9par0906View
4AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A42par0906View
5PD 94042 x (AD)4-08, F2 (2016)AD_ch15_Dt.01N/A151.4pAR906View
Sequence
>pAR0906 ID=pAR0906; Name=pAR0906; organism=Gossypium hirsutum; type=genetic_marker; length=503bp
ACAAAATAAATATTGAATTTGAATATTAGAAAGATGGTTTTAAGAAGATG
AAGAATAAAAAGAAAAGAGGGTTAGCATGTAATCTGACATATCATTCCAT
CTTTCTCTCCAGTCACTGCCCAAACCCAAAAATAATTGCCAACATCAGAT
AGGATCAGTCTGTCATTATATTAAGTATTGCTACCACTGCTACCTATACA
ATGGGTCAGGCAAAGGCAATAATTTCAAGAACTGAAATTTAAAAAAAAAA
AAAACACTGTCCTATTGCTCTAGATATCTGTTCAATTCTTTTTCTTTTCT
TTTCTTTCTTTTTTTTTTGCGTGTTTAAGTACATGTTCAGTCTAATATCC
TTGCCCATAGTACCTAAAAAGGCAAAAAAAAAAAAACTGGAGAGAAAAGG
GGAAACAATAATAATGTCTAAACTCCATATGGATTTACTTATGTTCATCC
ACCGTCATCATCATGCTTTCCTGCAAATTTTTTTTTACCGTGACCTAAGA
AAT