pAR0377, pAR0377 (genetic_marker) Gossypium hirsutum

Marker Overview
NamepAR0377
Genbank IDCA992892
TypeRFLP
SpeciesGossypium hirsutum
GermplasmT-25
Source TypecDNA
Restriction EnzymeEcoR1; Xho1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA992892
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:4928534..4929123 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D12chromosomeD12:5910916..5911505 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:4674919..4675508 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018226.1chromosomeCM018226.1:5826170..5826759 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:51643424..51644011 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:14098638..14099222 -Gossypioides kirkii genome ISU_v3n/a
tig00015610_CRI-A2_v1.0.a1chromosometig00015610_CRI-A2_v1.0.a1:556041..556630 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016625.1chromosomeCM016625.1:22719780..22720369 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:1922428..1923017 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:45815157..45815746 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:4698714..4699303 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D12chromosomeD12:5884936..5885525 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:4754213..4754802 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:4552623..4553212 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:5816549..5817138 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:4811526..4812115 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:5957671..5958260 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:4780879..4781468 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D12chromosomeD12:5914288..5914877 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At12chromosomeAt12:5420352..5420941 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At12chromosomeAt12:5427987..5428576 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt12chromosomeDt12:6254868..6255457 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3115supercontigscaffold3115:260408..260997 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3115supercontigscaffold3115:268043..268632 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20514supercontigscaffold20514:104408..104997 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A12chromosomeGbar_A12:4789107..4789696 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D12chromosomeGbar_D12:5755679..5756268 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:4611084..4611673 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D12chromosomeD12:5744626..5745215 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:4503004..4503593 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017634.1chromosomeCM017634.1:5766260..5766849 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:4860940..4861529 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017660.1chromosomeCM017660.1:5804445..5805034 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:4470133..4470722 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017712.1chromosomeCM017712.1:5847596..5848185 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:4809798..4810387 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D12chromosomeD12:6101860..6102449 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:7605108..7605697 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:7552181..7552770 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:5766507..5767096 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:8575893..8576482 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:5689286..5689875 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:5575565..5576154 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:5454687..5455276 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:5711206..5711795 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:5046426..5047015 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:3780326..3780915 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:4852752..4853341 -Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:8369591..8370180 -Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:6519871..6520459 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:148207009..148207598 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr08chromosomepAR0377:1..590 .
Chr08:5698331..5698920 -		n/a
Chr10chromosomepAR0377:1..590 .
Chr10:13591852..13592441 +		n/a
Germplasm
Stock NameType
T-25accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Deltapine-61 x Seaberry, F2 (2000)AD_ch19_Dt.05N/A326.1pAR0377View
2Pima S-7 x Empire, F2 (2007)AD_ch19_Dt.05N/A3.8pAR0377View
3AD-genome wide Reference Map (2009)AD_ch01_At.01N/A106pAR0377View
4Sic'on x F-177, F2 (2004)AD_ch01_At.01N/A162.9pAR0377View
5AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A264pAR0377View
6Palmeri x K-101, F2 (2007)AD_ch19_Dt.05N/A182.3pAR377View
Sequence
>pAR0377 ID=pAR0377; Name=pAR0377; organism=Gossypium hirsutum; type=genetic_marker; length=590bp
AACTAAAACTGAAGAAATTCTAGATTAAACAAGCAGCTTATTACTTATTA
CAAGTATGTTAAGCAATTTAAGCATCTTTTGACATCCCCAGCAATCTCTT
CAAACCAGGAAACATAGGTGGATCAGACCTGTTATCATCTTGCAAATATT
CATCCACCATTTCCTTAACTGATCTAGCAGATAAAGGATAAAAATGAACA
CTCCATTCATCAACGAACTTGTTAATCAAAACCCATTTCTCCTCTTCTCT
CATCTTTCTCCATTTCTTGTTCATTTCCTCTTCTTTCAATGACAAATACT
GGCACAACTCTGTGAACAGAAACTCTTTGCTTTTCTTCATGGCTTTCTCT
TTTTGCTCCAAATGGGTGTTAATCTTTTGCACATTGATTGCCAAATCTAA
AGCCAGGGCTGAATCGCTGAGCTTGTTTTTGGTGCATGGAATCTTAGTAT
TGGGTCTATTGTTGGAGATGGAAGGATGGTTTCGGAACTTCCCAACCTGT
GGGAGGCAATTCGGGGAAAACTGGAACAGAGAGACGTTCATCGCCGGTTG
CCGGGAAATAGATTTGGTTTTCGATTGTGGGAGAAACGGG