G1097, G1097 (genetic_marker) Gossypium raimondii

Marker Overview
NameG1097
Genbank IDCA994218
TypeRFLP
SpeciesGossypium raimondii
Source TypecDNA
Restriction EnzymePst1
Publication[view all]
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA994218
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:20658491..20659708 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:5436326..5437537 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_01chromosomeD10_01:55233198..55234392 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr2chromosomeAt_chr2:5760726..5761943 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3717_D01supercontigscaffold3717_D01:87470..88687 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:5786170..5787387 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:5842542..5843759 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:5525564..5526781 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:5667335..5668552 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9182supercontigscaffold9182:49503..50726 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:6011859..6013070 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:5844140..5845351 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:5624809..5626020 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:6121964..6123187 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:5729896..5731107 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:5900429..5901646 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:5209838..5211055 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:6979522..6980743 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:5561041..5562258 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:5934745..5935961 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:5702963..5704187 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:5775649..5776848 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:6902604..6903819 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:4764204..4765397 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:6316209..6317424 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:7665244..7666443 +Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:5481564..5482785 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:191938356..191939556 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr02chromosomeG1097:1..1218 .
Chr02:7198089..7199306 +		n/a
Chr2chromosomeG1097:1..1218 .
Chr2:41487446..41488663 -		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch01_At.01N/A183.8G1097View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch01_At.01N/A96.54G1097View
3Palmeri x K-101, F2 (2007)AD_ch01_At.01N/A147.2G1097View
4Pima S-7 x Empire, F2 (2007)AD_ch01_At.01N/A50G1097View
5AD-genome wide Reference Map (2009)AD_ch01_At.01N/A60G1097View
6Sic'on x F-177, F2 (2004)AD_ch01_At.01N/A200.6G1097View
Sequence
>G1097 ID=G1097; Name=G1097; organism=Gossypium raimondii; type=genetic_marker; length=1218bp
GGAGGTTCAAAAGCTTTGTAGTGACTAGTAAAAACATGCCCTAAAAGGAC
ATTTTGACCATAACCAAGTATTCATATCCGTAATGAATTGATTCTTTGAT
CTTATCAGCATAATGCTACCTGACCCCAGCTATTTGATAGATTGAGTTCT
TTTGATTAGCTGAAAATAAGACTTGTGAAACTGCCATACAGGACATTTCT
CTAATATGGTTGACTGCTTTAACCAACTCAGTAAACAAAATAATCTTGCG
ATAGCTCTATATATTTTAGCTTGGAAAATATGTATGCGTCTATGTATTCA
TGGGCCTATTAGTGAGATATATCTTTCTATAGATGTTTGAGTGATATTCT
TTTTGTAACTTTTAAGATGGCATATGTATATGTTAATGTCTTTGTGTTTG
GGGTTGGTTGAGCCTGCTGGCTTCTTTGAATTTACTTTTATAGATGGTTT
CTAGTGAAACTCAGATTTTGTTAGAGATGATCAATTAATTATTAGCATTG
ACTGGTCTGGCCCCTTGAGAGGAATGCATCACATTATGCATGGACATGCA
TTAAGTGGAGATATCACCATAACAATGGAAGAAACAATTTTATTGAAATC
TGATAAATATAGCATCAAGTTTATTTTTCCCCTTATTTCTTCAAGATTCT
AAAATTCAAGGCACTGTTCCAGAGGTTTTTTTAAAATTATTTTTAATTTA
AAATAGATAAGCAATGTTAAGTCAATAGGATACTAAATTTTGCTTTAAGT
TCTTTTCTTCATATTGTCTACTTATTATTGCAGCTAAGATGCAATCCAAC
TGGGTTAAGTTTCCACTTTATATGCGAGCTTATCAGTTCTTGTGGATCTT
CATATCATGGTTTCTCTAATGTTTTTTGTTTGTGTCTTGCTTTAATATGC
TAGTTGTCCTCAATAATGTATTACCATTTTGAAGTTTTTATTGTATTTGT
AATGTAGTTACCACTGTTTCATGTCATTTTCTGGTCGGGTTACTCTTCAT
ATGAATAGATTAATATTTTACTAGCAGCTGACTGTAGATGCAGAAAATTA
TTTTATTACTTCCTAGTAAGTGATTTTTCATGCAGATTTTGCTCCAAAAT
TGACACACCTCCAAGAGAATATTTGAGCTGAGGCCCTTCCTGCAAAAGGA
ATGTAGGTAGCAATGGTTTTGTCTTCCCTACTTCGAATTTTCTATCTGGG
AGTGTGAAAGCTCTCTTT