Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr22	BNL0358	BNL358	marker_locus	132.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr22	BNL1047	BNL1047d	marker_locus	145.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr22	CIR0183	CIR183a	marker_locus	162.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr22	BNL3994	BNL3994b	marker_locus	177.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr22	BNL1061	BNL1061	marker_locus	186.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr22	BNL1394	BNL1394	marker_locus	197.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr22	BNL3661	BNL3661	marker_locus	202.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL3598	BNL3598	marker_locus	0 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	JESPR0082	JESPR82	marker_locus	11.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL3638	BNL3638*	marker_locus	13.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	JESPR0305	JESPR305	marker_locus	16.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL1521	BNL1521a	marker_locus	22.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL2961	BNL2961b	marker_locus	28 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL2655	BNL2655d*	marker_locus	32.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL0686	BNL686b*	marker_locus	34.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL1579	BNL1579a	marker_locus	46.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL2977	BNL2977	marker_locus	52.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL2611	BNL2611b	marker_locus	58.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	m13e13-500	m13e13-500	marker_locus	65.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	m3e8-720	m3e8-720	marker_locus	65.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL1672	BNL1672b	marker_locus	65.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	m3e8-k	m3e8-k	marker_locus	69.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL3031	BNL3031a	marker_locus	71.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL3511	BNL3511	marker_locus	74.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	m14e17-300	m14e17-300	marker_locus	79.3 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)