Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL1902	BNL1902b	marker_locus	90.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL0584	BNL584a	marker_locus	98 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	TMB0508	TMHK22	marker_locus	108.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL3264	BNL3264	marker_locus	120.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL3436	BNL3436b	marker_locus	158.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL0584	BNL584c	marker_locus	163.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	CIR0109	CIR109	marker_locus	165.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL3436	BNL3436	marker_locus	167 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL0584	BNL584b	marker_locus	167.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL3436	BNL3436a	marker_locus	169.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	m5e1-430	m5e1-430	marker_locus	173.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL3436	BNL3436c	marker_locus	175.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	m9e8-450	m9e8-450	marker_locus	189.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL1047	BNL1047b	marker_locus	193.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL3190	BNL3190a*	marker_locus	206 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	S1121	S1121	marker_locus	216.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	m12e17-520	m12e17-520*	marker_locus	222.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL3806	BNL3806*	marker_locus	223.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	m1e13-800	m1e13-800*	marker_locus	225.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	m3e6-400	m3e6-400*	marker_locus	230.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	JESPR0224	JESPR224	marker_locus	233.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	JESPR0229	JESPR229*	marker_locus	236.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	JESPR0215	JESPR215*	marker_locus	238.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	JESPR0227	JESPR227	marker_locus	240.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	m4e1-900	m4e1-900	marker_locus	242.6 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)