Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL1664	BNL1664b	marker_locus	160.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL2499	BNL2499b	marker_locus	164.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	m13e3-590	m13e3-590	marker_locus	164.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL2499	BNL2499	marker_locus	164.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL3084	BNL3084b	marker_locus	166.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	m4e9-600	m4e9-600	marker_locus	167.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	m10e16-380	m10e16-380	marker_locus	167.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	m10e8-680	m10e8-680	marker_locus	169.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	JESPR0231	JESPR231a	marker_locus	178.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	JESPR0110	JESPR110	marker_locus	186.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL2655	BNL2655a*	marker_locus	199.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr23	BNL3145	BNL3145d	marker_locus	207 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	BNL3084	BNL3084c	marker_locus	0 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	BNL2597	BNL2597	marker_locus	7.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	BNL1017	BNL1017c	marker_locus	16.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	BNL1017	BNL1017d	marker_locus	22.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	BNL3860	BNL3860	marker_locus	31 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	CIR0070	CIR070b	marker_locus	42.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	BNL2655	BNL2655e*	marker_locus	56.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	m2e1-450	m2e1-450	marker_locus	59.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	m5e8-680	m5e8-680	marker_locus	68.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	BNL3084	BNL3084a	marker_locus	71.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	m4e10-860	m4e10-860	marker_locus	71.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	BNL2499	BNL2499c	marker_locus	73 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	BNL2499	BNL2499a	marker_locus	73 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)