CIR0070, CIR0070 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0070
AliasCIR70
CIR070
Genbank IDAJ567019
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567019
Source Typegenomic
Repeat Motif(AC)8
PCR ConditionAnnealing temperature: 55
Primer 1CIR070_F: AACCACCAACCATTCA
Primer 2CIR070_R: TGGGACTCGGTCATC
Product Length121
PolymorphismP_ CIR0070
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567019
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D10chromosomeD10:16398723..16398842 -
A10chromosomeA10:110243717..110243999 -
CM018224.1chromosomeCM018224.1:15181467..15181584 -
D5_10chromosomeD5_10:47120373..47120484 +
CM016623.1chromosomeCM016623.1:143935642..143935768 -
Dt_chr11chromosomeDt_chr11:12950500..12950619 +
At_chr6chromosomeAt_chr6:54826007..54826289 -
D10chromosomeD10:15190161..15190280 -
A10chromosomeA10:99171928..99172210 -
Ghir_D10chromosomeGhir_D10:15609358..15609477 -
Ghir_A10chromosomeGhir_A10:113090612..113090894 -
D10chromosomeD10:15236898..15237017 -
A10chromosomeA10:113507817..113508099 -
D10chromosomeD10:15804218..15804337 -
A10chromosomeA10:113210712..113210994 -
A10chromosomeA10:107633552..107633822 +
D10chromosomeD10:15757408..15757527 -
Dt10chromosomeDt10:16935922..16936039 -
scaffold2085supercontigscaffold2085:277471..277579 +
scaffold9970supercontigscaffold9970:313841..313958 -
Gbar_D10chromosomeGbar_D10:14983277..14983394 -
Gbar_D08chromosomeGbar_D08:37502060..37502168 -
D10chromosomeD10:15538308..15538425 -
CM017632.1chromosomeCM017632.1:15423524..15423639 -
CM017658.1chromosomeCM017658.1:15700153..15700270 -
CM017710.1chromosomeCM017710.1:15544785..15544902 -
D10chromosomeD10:15895186..15895305 -
A10chromosomeA10:116422620..116422902 -
Chr10chromosomeChr10:126599235..126599505 -
Chr10chromosomeChr10:15024625..15024736 -
Chr11chromosomeChr11:15205162..15205651 -
Chr04chromosomeChr04:36138546..36138656 -
chr11chromosomechr11:13326833..13326946 -
Chr11chromosomeChr11:15482563..15482678 -
Chr04chromosomeChr04:38138496..38138616 -
Chr11chromosomeChr11:12314528..12314643 -
F10chromosomeF10:17671489..17671610 -
Chr11chromosomeCIR0070:1..243 .
Chr11:15090369..15090603 -
scaffold23supercontigCIR0070:1..243 .
scaffold23:491664..491898 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567019AJ567019Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch21_Dt.11N/A0CIR070bView
2Handan-208 x Pima-90, F2:3 (2007)AD_ch24_Dt.08N/A42.9CIR070bView
3Handan-208 x Pima-90, F2:3 (2007)AD_ch20_Dt.10N/A60.4CIR070aView
47235 x TM-1, RIL (2007)AD_ch24_Dt.08N/A58.2CIR070aView
5Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch24_Dt.08N/A113.3CIR070View
6Guazuncho-2 x VH8-4602, consensus (2009)AD_ch24_Dt.08N/A72.74CIR070View
7SG 747 x Giza 75, BIL (2013)AD_ch20_Dt.10N/A32.1CIR070View
8AD-genome wide Reference Map (2009)AD_ch24_Dt.08N/A53cir0070View
9PD 94042 x (AD)4-08, F2 (2016)AD_ch20_Dt.10N/A90CIR070View
Sequence
>CIR0070 ID=CIR0070; Name=CIR0070; organism=Gossypium hirsutum; type=genetic_marker; length=121bp
AACCACCAACCATTCAACATAATTAAATCTTAAAACTTAACAGTTGGAAA
ACAAATAACAAGTTTAAACACACACACACACACATATATTTAAAATAGGA
CCATTAGATGACCGAGTCCCA