BNL3860, BNL3860 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3860
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3860_orig
Source Typegenomic
Repeat Motif(TG)11
PCR ConditionAnnealing temperature: 55
Primer 1BNL3860_F: GAGGAATTGAGCATTGGGAA
Primer 2BNL3860_R: TGCTGCACATCATGAATGAA
PolymorphismP_ BNL3860
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:64656211..64656400 +
A08chromosomeA08:118866707..118866888 +
CM018222.1chromosomeCM018222.1:60875369..60875564 +
CM018209.1chromosomeCM018209.1:113861600..113861781 +
D5_08chromosomeD5_08:57061202..57061397 +
KI_08chromosomeKI_08:35877100..35877281 +
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:123894608..123894789 +
D10_08chromosomeD10_08:4358397..4358592 -
CM016621.1chromosomeCM016621.1:6620211..6620388 -
At_chr1chromosomeAt_chr1:52087608..52087789 +
scaffold862.1supercontigscaffold862.1:26644..26833 -
D08chromosomeD08:61451145..61451334 +
A08chromosomeA08:98975507..98975688 +
Ghir_D08chromosomeGhir_D08:63853948..63854137 +
Ghir_A08chromosomeGhir_A08:117381694..117381875 +
D08chromosomeD08:64280343..64280532 +
A08chromosomeA08:120058600..120058781 +
D08chromosomeD08:63689500..63689689 +
A08chromosomeA08:120218432..120218613 +
D08chromosomeD08:60986764..60986953 +
A08chromosomeA08:115954435..115954616 +
Dt08chromosomeDt08:63835952..63836133 +
Dt08chromosomeDt08:63832880..63833061 +
scaffold19418supercontigscaffold19418:108043..108224 +
scaffold19418supercontigscaffold19418:104971..105152 +
scaffold5413supercontigscaffold5413:61166..61347 -
Gbar_D08chromosomeGbar_D08:61000479..61000674 +
Gbar_A08chromosomeGbar_A08:114508673..114508854 +
D08chromosomeD08:62849312..62849507 +
A08chromosomeA08:115520975..115521156 +
CM017630.1chromosomeCM017630.1:62585811..62586006 +
CM017617.1chromosomeCM017617.1:114106551..114106732 +
CM017656.1chromosomeCM017656.1:64765768..64765947 +
CM017643.1chromosomeCM017643.1:123619586..123619767 +
CM017708.1chromosomeCM017708.1:61327813..61328006 +
CM017695.1chromosomeCM017695.1:114723712..114723893 +
D08chromosomeD08:64476230..64476419 +
A08chromosomeA08:122083820..122084001 +
Chr08chromosomeChr08:126418223..126418404 +
Chr08chromosomeChr08:127345802..127345983 +
Chr08chromosomeChr08:57974261..57974458 +
B_08chromosomeB_08:98972925..98973116 +
Chr04chromosomeChr04:59399900..59400103 +
Chr_04chromosomeChr_04:41723894..41724073 +
Chr04chromosomeChr04:61860088..61860287 +
Chr04chromosomeChr04:33139325..33139524 +
Chr04chromosomeChr04:40208045..40208242 +
E08chromosomeE08:116371371..116371562 +
F08chromosomeF08:100155729..100155922 +
Chr08chromosomeChr08:7021789..7021972 -
Chr04chromosomeBNL3860:1..478 .
Chr04:57557776..57558262 +
Chr2chromosomeBNL3860:1..478 .
Chr2:16377445..16377931 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3860_origBNL3860_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch24_Dt.08N/A39BNL3860View
2Guazuncho-2 x VH8-4602, BC2 (2005)AD_ch24_Dt.08N/A0BNL3860View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch24_Dt.08N/A27.29BNL3860View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch24_Dt.08N/A18.59BNL3860View
5Handan-208 x Pima-90, F2:3 (2007)AD_ch24_Dt.08N/A31BNL3860View
6Palmeri x K-101, F2 (2007)AD_ch24_Dt.08N/A44.5BNL3860View
7Xinluzao-1 x Hai-7124, F2 (2008)AD_ch24_Dt.08N/A171.4BNL3860View
8CCRI-36 x Hai-7124, F2 (2007)AD_ch24_Dt.08N/A170.3BNL3860View
9AD-genome wide Reference Map (2009)AD_ch24_Dt.08N/A170BNL3860View
10CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A110.6BNL3860View
11Monsanto SSR Bin Map, (2009)AD_ch24_Dt.08N/A21BNL3860View
12TM-1 x Hai-7124, BC1 (2008)AD_ch24_Dt.08N/A56.99BNL3860-190View
13TM-1 x Hai-7124, BC1 (2007)AD_ch24_Dt.08N/A52.6BNL3860-190View
14Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch24_Dt.08N/A10.9BNL3860-190View
15TM-1 x Hai-7124, BC1 (2012)AD_ch24_Dt.08N/A109.8BNL3860-190View
16TM-1 x Hai-7124, BC1S1 (2007)AD_ch24_Dt.08N/A48.7BNL3860_190View
Sequence
>BNL3860 ID=BNL3860; Name=BNL3860; organism=Gossypium hirsutum; type=genetic_marker; length=190bp
GAGGAATTGAGCATTGGGAAAATCAAGTTTAAAGCTTTTGATTTGGGAGG
CCATCAGATTGCTCGAAGAGTTTGGAAAGATTACTACGCCAAGGTACATT
TCTTTTACCTACAAATCTATCTGATTAGTTGCAATTTGATATGTGTGTGT
GTGTGTGTGTGTGTTTGGTGTTCATTCATGATGTGCAGCA