Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	m5e2-280	m5e2-280	marker_locus	76.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	BNL2655	BNL2655b	marker_locus	80.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	CIR0413	CIR413b	marker_locus	82.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	BNL0269	BNL269	marker_locus	89.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	BNL3474	BNL3474	marker_locus	98.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	JESPR0157	JESPR157b*	marker_locus	107 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	TMB0555	TMHL21	marker_locus	115.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	JESPR0157	JESPR157*	marker_locus	127.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	m8e16-820	m8e16-820	marker_locus	134 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	m8e16-350	m8e16-350	marker_locus	135.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	BNL1521	BNL1521b	marker_locus	148.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	BNL2961	BNL2961c	marker_locus	150.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	m2e16-800	m2e16-800	marker_locus	169.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL0272	BNL272	marker_locus	0 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL0872	BNL872	marker_locus	6.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL2569	BNL2569	marker_locus	15.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	TMB0313	TMHK19	marker_locus	25.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL1047	BNL1047c*	marker_locus	38.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL0390	BNL390b*	marker_locus	49.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL3903	BNL3903b*	marker_locus	65.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL0267	BNL267	marker_locus	74.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL3359	BNL3359b	marker_locus	86.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL1902	BNL1902a	marker_locus	88.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL0584	BNL584e*	marker_locus	88.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr25	BNL0584	BNL584d*	marker_locus	88.6 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)