BNL2961, BNL2961 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2961
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2961_orig
Source Typegenomic
Repeat Motif(GA)11
PCR ConditionAnnealing temperature: 55
Primer 1BNL2961_F: TCGAAAGGGTGTTTCTTCTT
Primer 2BNL2961_R: GGGGATGCTTGTCACATCTT
PolymorphismP_ BNL2961
CommentPrimer data obtained in 2000
Germplasm
Stock NameType
Deltapine 90obsolete_cultivar
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL2961_FBNL2961_FGossypium hirsutumprimer
BNL2961_RBNL2961_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
boll numberqBN.7T-ch24.e2Gossypium hirsutumQTL
micronaireqMIC.7T-ch24.e2Gossypium hirsutumQTL
seed number per bollqSNPB.HP-ch8Gossypium spp.QTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2961BNL2961Gossypium hirsutummarker_locus
BNL2961aBNL2961aGossypium hirsutummarker_locus
BNL2961bBNL2961bGossypium hirsutummarker_locus
BNL2961cBNL2961cGossypium hirsutummarker_locus
BNL2961(A02,D03,C10)BNL2961(A02,D03,C10)Gossypium hirsutummarker_locus
BNL2961bBNL2961b-89.681Gossypium hirsutummarker_locus
BNL2961aBNL2961a-67.16Gossypium hirsutummarker_locus
BNL2961BNL2961-47.6Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2961_origBNL2961_origGossypium hirsutumsequence_feature


Sequence
>BNL2961 ID=BNL2961|Name=BNL2961|organism=Gossypium hirsutum|type=genetic_marker|length=221bp
TCGAAAGGGTGTTTCTTCTTCTGTTATATATATATATATATAGAGAGAGA
GAGAGAGAGAGAGAAGCATGTNNAGAAATAATAAGTAAGAATATAGAAAA
AAAATAATACAAGCTTTGTAAAGAGGAATAACTTGAACTATATTTTTGAT
GAAAGACTTTGACCTAACCTTTAAGAATTTCCTCATCTGAAAACTTTGAA
AAAGATGTGACAAGCATCCCC
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
17235 x TM-1, RIL (2007)7235 x TM-1, RIL (2007).7T-RIL_D08N/AAD_chr.2439.1BNL2961View
2Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c24N/AAD_chr.2447.71BNL2961View
3Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c08N/AAD_chr.0867.85BNL2961View
4Guazuncho-2 x VH8-4602, RIL (2009)Guazuncho-2 x VH8-4602, RIL (2009).GV-RIL_ch24/lgD03N/AAD_chr.2441.99BNL2961View
5Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr24N/AAD_chr.2470BNL2961View
6Palmeri x K-101, F2 (2007)Palmeri x K-101, F2 (2007).PK-F2_chr24/lgD03N/AAD_chr.2474.4BNL2961View
7AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr08N/AAD_chr.0866BNL2961View
8Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg3/chr24N/AAD_chr.24144.6BNL2961View
9Yumian-1 x T586, F2:3 (2005)Yumian-1 x T586, F2:3 (2005).YT-F2:3_A02/D03N/AAD_chr.0835.6BNL2961View
10Yumian-1 x T586, F2:3 (2005)Yumian-1 x T586, F2:3 (2005).YT-F2:3_A02/D03N/AAD_chr.2435.6BNL2961View
11CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_D03N/AAD_chr.24140BNL2961View
12AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr24N/AAD_chr.24171BNL2961View
13(YM-1 x CCRI-35) x (YM-1 x 7235), 4WC (2012)YCY7-4WC_chr24N/AAD_chr.2446.3BNL2961View
147235 x TM-1, F2:3 (2005)7T-F2:3_chr24/LGD03N/AAD_chr.2410.4BNL2961View
15Yumian-1 x 7235, RIL (2015)Y7-RIL_chr24N/AAD_chr.2437.5BNL2961View
16CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr24N/ADt.0889.5BNL2961View
17Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr08/lgA02N/AAD_chr.0887.3BNL2961aView
18Guazuncho-2 x VH8-4602, BC2 (2005)Guazuncho-2 x VH8-4602, BC2 (2005).GV-BC2_chr08/lgA02N/AAD_chr.0823.8BNL2961aView
19Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr08/lgA02N/AAD_chr.0840.2BNL2961aView
20Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr08N/AAD_chr.0870BNL2961aView
21TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c24N/AAD_chr.2461.12BNL2961aView
22TM-1 x 3-79, RIL (2014)T3-RIL.14_chr24N/AAD_chr.2464.2BNL2961aView
23Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr24/lgD03N/AAD_chr.2463.5BNL2961bView
24Guazuncho-2 x VH8-4602, BC2 (2005)Guazuncho-2 x VH8-4602, BC2 (2005).GV-BC2_chr24/lgD03N/AAD_chr.2420.6BNL2961bView
25Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr23N/AAD_chr.2328BNL2961bView
26Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr24N/AAD_chr.2450BNL2961bView
27TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c08N/AAD_chr.0879.83BNL2961bView
28TM-1 x 3-79, RIL (2014)T3-RIL.14_chr08N/AAD_chr.0889.7BNL2961bView
29Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr24/lgD03N/AAD_chr.24150.9BNL2961cView
30Yumian-1 x T586, F2:3 (2005.v0)YT-F2:3_chr08N/AAD_chr.0835.6BNL2961(A02,D03,C10)View
31Yumian-1 x T586, F2:3 (2005.v0)YT-F2:3_chr24N/AAD_chr.2435.6BNL2961(A02,D03,C10)View
32TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.08N/AAD_chr.0889.68BNL2961bView
33TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.24N/AAD_chr.2467.16BNL2961aView
34PD 94042 x (AD)4-08, F2 (2016)PA-F2_chr24N/ADt.0847.6BNL2961View