Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr26	m11e16-740	m11e16-740	marker_locus	60.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	m12e9-350	m12e9-350*	marker_locus	66.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	m10e15-630b	m10e15-630b	marker_locus	68.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	m10e15-630	m10e15-630	marker_locus	68.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	m13e2-600	m13e2-600	marker_locus	70 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	m2e6-200	m2e6-200	marker_locus	71.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	JESPR0092	JESPR92a	marker_locus	71.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	BNL3510	BNL3510	marker_locus	71.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	BNL3435	BNL3435	marker_locus	71.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	JESPR0092	JESPR92b	marker_locus	71.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	BNL3867	BNL3867c*	marker_locus	71.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	BNL0116	BNL116*	marker_locus	74.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	m1e4-400	m1e4-400	marker_locus	78.2 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	BNL1227	BNL1227c*	marker_locus	83 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	BNL3816	BNL3816	marker_locus	91.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	BNL1402	BNL1402a	marker_locus	102.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	CIR0272	CIR272c	marker_locus	105.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	BNL1600	BNL1600	marker_locus	106 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	BNL3368	BNL3368b	marker_locus	108.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	BNL3537	BNL3537b*	marker_locus	117.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	CIR0032	CIR032	marker_locus	120.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	BNL2725	BNL2725*	marker_locus	123 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	JESPR0136	JESPR136	marker_locus	124.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	BNL1045	BNL1045	marker_locus	124.6 cM
Handan-208 x Pima-90, F2:3 (2007).chr26	CIR0085	CIR085a	marker_locus	126.6 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)