JESPR0092, JESPR0092 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	JESPR0092
Alias	JESPR092
Genbank ID	AF351331
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	AF351331.1
Source Type	genomic
Repeat Motif	(GAA)23
Primer 1	JESPR0092_F: GGGACCTCTATTGAATAGCTGGAG
Primer 2	JESPR0092_R: CTCTTGGCATCATTAGTTCCTGG
Publication	[view all]
Comment	Primer data obtained in 2002

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	AF351331

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D12	chromosome	D12:29441698..29442085 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018226.1	chromosome	CM018226.1:14485566..14485899 -	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
D5_12	chromosome	D5_12:30156720..30156966 -	Gossypium raimondii (D5) 'D5-4' genome NSF_v1	n/a
Dt_chr8	chromosome	Dt_chr8:18396806..18397937 +	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
D12	chromosome	D12:26548966..26549350 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_D12	chromosome	Ghir_D12:14821061..14821445 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
D12	chromosome	D12:14578020..14578404 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
D12	chromosome	D12:14855607..14855969 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
D12	chromosome	D12:14784263..14784647 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Dt12	chromosome	Dt12:26006091..26006424 +	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
scaffold3997	supercontig	scaffold3997:332355..332688 +	Gossypium barbadense (AD2) '3-79' genome HAU_v1	n/a
Gbar_D12	chromosome	Gbar_D12:28077261..28077594 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
D12	chromosome	D12:14319092..14319425 -	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017634.1	chromosome	CM017634.1:29378906..29379281 +	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017660.1	chromosome	CM017660.1:14169464..14169851 -	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017712.1	chromosome	CM017712.1:14490164..14490497 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
D12	chromosome	D12:15062894..15063278 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a

Publications


Year	Publication
2001	Reddy O, Pepper A, Abdurakhmonov I, Saha S, Jenkins J, Brooks T, Bolek Y, El-Zik K. New dinucleotide and trinucleotide microsatellite marker resources for cotton genome research. Journal of cotton science. 2001; 5(2):103-113

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
AF351331.1	AF351331.1	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Acala-44 x Pima S-7, F2 (2004)	AD_ch26_Dt.12	N/A	15	JESPR92	View
2	Emian-22 x 3-79, BC1 (2011)	AD_ch26_Dt.12	N/A	29.39	JESPR92	View
3	Xinluzao-1 x Hai-7124, F2 (2008)	AD_ch12_At.12	N/A	53.9	JESPR92	View
4	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch26_Dt.12	N/A	116.4	JESPR92	View
5	Guazuncho-2 x VH8-4602, BC1 (2005)	AD_ch26_Dt.12	N/A	132.1	JESPR092	View
6	Guazuncho-2 x VH8-4602, consensus (2009)	AD_ch26_Dt.12	N/A	84.16	JESPR092	View
7	TM-1 x 3-79, RIL (2006)	AD_ch26_Dt.12	N/A	9.1	JESPR092	View
8	TM-1 x 3-79, RIL (2012)	AD_ch26_Dt.12	N/A	27.5	JESPR092	View
9	TM-1 x 3-79, RIL (2014)	AD_ch26_Dt.12	N/A	38.8	JESPR092	View
10	Monsanto SSR Bin Map, (2009)	AD_ch26_Dt.12	N/A	81	JESPR092	View
11	Handan-208 x Pima-90, F2:3 (2007)	AD_ch26_Dt.12	N/A	71.1	JESPR92a	View
12	Handan-208 x Pima-90, F2:3 (2007)	AD_ch26_Dt.12	N/A	71.5	JESPR92b	View
13	AD-genome wide Reference Map (2009)	AD_ch24_Dt.08	N/A	48	jespr0092	View
14	AD-genome wide Reference Map (2009)	AD_ch26_Dt.12	N/A	97	jespr0092	View
15	TM-1 x Hai-7124, BC1 (2008)	AD_ch26_Dt.12	N/A	39.93	JESPR92-195	View
16	TM-1 x Hai-7124, BC1 (2007)	AD_ch26_Dt.12	N/A	41.4	JESPR92-195	View
17	Vsg x (TM-1 x Hai-7124), DH (2005)	AD_ch24_Dt.08	N/A	128.8	JESPR92-195	View
18	TM-1 x Hai-7124, BC1 (2005.v0)	AD_ch26_Dt.12	N/A	177.3	JESPR92-195	View
19	TM-1 x Hai-7124, BC1 (2012)	AD_ch26_Dt.12	N/A	46	JESPR92-195	View
20	TM-1 x 3-79, RIL (2012.v3)	AD_ch26_Dt.12	N/A	38.8	JESPR092	View

Sequence

>JESPR0092 ID=JESPR0092; Name=JESPR0092; organism=Gossypium hirsutum; type=genetic_marker; length=385bp
GGGACCTCTATTGAATAGCTGGAGACTCTGTTCTACAGCAGTGAGTTGAA
GAAAGTGAGGATCCCAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAG
TGAGGATCCCACAGAAGGGAAGGAGATGTGGACATATTGAACGGGAACGG
CCATACCTAAATCATTCAACCAAGAACTAGTGATGCCAAGAGAAAAAATG
TAGATAAAATTTGTTTGCTTAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGTGAGGAT
CCCACAGAAGGGAAGGAGACGTAGACCTATTGAACGGGAACGATCATACC
TAAATCATTCAACCAGGAACTAATGATGCCAAGAG

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JESPR0092, JESPR0092 (genetic_marker) Gossypium hirsutum