BNL1402, BNL1402 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL1402
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1402_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1BNL1402A_F: CGAAAAGATAATATAAATATAGAAAGAGAG
Primer 2BNL1402a_R: TTCAACTCGGTTCGTCAAAA
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:62405684..62405783 +
CM018226.1chromosomeCM018226.1:58415151..58415244 +
Dt_chr8chromosomeDt_chr8:55275153..55275276 +
D12chromosomeD12:57864433..57864536 +
Ghir_D12chromosomeGhir_D12:61204425..61204520 +
Ghir_A12chromosomeGhir_A12:106063671..106063732 +
D12chromosomeD12:61270171..61270262 +
D12chromosomeD12:59117535..59117624 +
Dt12chromosomeDt12:61825590..61825679 +
Dt12chromosomeDt12:61811898..61811987 +
scaffold10878supercontigscaffold10878:169957..170046 +
scaffold10878supercontigscaffold10878:156265..156354 +
Gbar_D12chromosomeGbar_D12:57646220..57646307 +
CM017712.1chromosomeCM017712.1:59964382..59964473 +
D12chromosomeD12:61807584..61807683 +
Chr_08chromosomeChr_08:41998466..41998660 +
Chr08chromosomeBNL1402:1..188 .
Chr08:55755250..55755408 +
Chr8chromosomeBNL1402:1..188 .
Chr8:2987909..2988067 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1402_origBNL1402_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Handan-208 x Pima-90, F2:3 (2007)AD_ch26_Dt.12N/A102.5BNL1402aView
2Emian-22 x 3-79, BC1 (2011)AD_ch26_Dt.12N/A96.98BNL1402aView
3(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch26_Dt.12N/A39.3BNL1402aView
4SG 747 x Giza 75, BIL (2013)AD_ch26_Dt.12N/A139.4BNL1402aView
5Yumian-1 x 7235, RIL (2015)AD_ch26_Dt.12N/A16BNL1402View
6CCRI-35 x Yumian-1, RIL (2015)AD_ch26_Dt.12N/A17.4BNL1402View
7CCRI-35 x Yumian-1, RIL (2017)AD_ch26_Dt.12N/A153.98BNL1402View
Sequence
>BNL1402 ID=BNL1402; Name=BNL1402; organism=Gossypium hirsutum; type=genetic_marker; length=100bp
CGAAAAGATAATATAAATATAGAAAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGTTCGTTTTGACGAACCGAGTTGAA