BNL0116, BNL0116 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL0116
AliasBNL116
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL0116_orig
Source Typegenomic
Repeat Motif(CT)16
PCR ConditionAnnealing temperature: 55
Primer 1BNL0116_F: GCGGCATGCTTTCTTCATCATATA
Primer 2BNL0116_R: ATAACCTGTGACATCTTTTTTTGC
PolymorphismP_ BNL0116
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:13876013..13876155 -
A12chromosomeA12:25249328..25249468 -
CM018226.1chromosomeCM018226.1:28600688..28600816 +
KI_12chromosomeKI_12:18261693..18261827 -
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:82485686..82485824 +
D10_12chromosomeD10_12:11299917..11300065 -
Dt_chr8chromosomeDt_chr8:28977951..28978093 +
At_chr8chromosomeAt_chr8:13362480..13362620 +
D12chromosomeD12:13985981..13986123 -
A12chromosomeA12:22815792..22815932 -
Ghir_D12chromosomeGhir_D12:30731490..30731630 +
Ghir_A12chromosomeGhir_A12:23403547..23403687 -
D12chromosomeD12:30129985..30130127 +
A12chromosomeA12:22827313..22827453 -
D12chromosomeD12:30772834..30772976 +
A12chromosomeA12:23477296..23477435 -
D12chromosomeD12:28672464..28672628 +
A12chromosomeA12:23423242..23423382 -
Dt12chromosomeDt12:14735577..14735705 -
scaffold8085supercontigscaffold8085:416723..416851 -
Gbar_D12chromosomeGbar_D12:14686617..14686745 -
D12chromosomeD12:29149842..29149970 +
CM017634.1chromosomeCM017634.1:14720546..14720674 -
CM017621.1chromosomeCM017621.1:22711619..22711755 -
CM017660.1chromosomeCM017660.1:29822707..29822841 +
CM017647.1chromosomeCM017647.1:23538885..23539017 -
CM017712.1chromosomeCM017712.1:29686193..29686321 +
D12chromosomeD12:30768622..30768764 +
A12chromosomeA12:23677568..23677708 -
Chr12chromosomeChr12:69321819..69321949 +
Chr12chromosomeChr12:24207341..24207479 -
Chr12chromosomeChr12:14588974..14589104 -
B_12chromosomeB_12:23430624..23430752 +
Chr08chromosomeChr08:14773555..14773695 -
chr08chromosomechr08:13302205..13302719 -
Chr_08chromosomeChr_08:12481729..12481865 -
Chr08chromosomeChr08:15049885..15050033 -
Chr08chromosomeChr08:9072724..9072891 -
Chr08chromosomeChr08:11251845..11251983 -
F12chromosomeF12:19722131..19722265 -
Chr12chromosomeChr12:121090511..121090645 -
Chr08chromosomeBNL0116:1..209 .
Chr08:14374742..14374940 -
Chr8chromosomeBNL0116:1..209 .
Chr8:46911148..46911346 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL0116_origBNL0116_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch26_Dt.12N/A29.35BNL116View
2Xinluzao-1 x Hai-7124, F2 (2008)AD_ch12_At.12N/A0BNL116View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch26_Dt.12N/A128.3BNL116View
4Handan-208 x Pima-90, F2:3 (2007)AD_ch26_Dt.12N/A74.2BNL116*View
5Monsanto SSR Bin Map, (2009)AD_ch12_At.12N/A61BNL0116aView
6Monsanto SSR Bin Map, (2009)AD_ch26_Dt.12N/A81BNL0116bView
7AD-genome wide Reference Map (2009)AD_ch26_Dt.12N/A101bnl0116View
8CCRI-35 x Yumian-1, RIL (2015)AD_ch26_Dt.12N/A114.5bnl0116View
9CCRI-35 x Yumian-1, RIL (2017)AD_ch26_Dt.12N/A51.09BNL0116View
Sequence
>BNL0116 ID=BNL0116; Name=BNL0116; organism=Gossypium hirsutum; type=genetic_marker; length=141bp
GCGGCATGCTTTCTTCATCATATAACGCATTTCCTTCATTATTTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTTTTCATTTATTTATTTCTTAAATT
CTAGGTCTCTACACCATGCAAAAAAAGATGTCACAGGTTAT