CIR0413, CIR0413 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0413
AliasCIR413
Genbank IDAJ567337
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567337
Source Typegenomic
Repeat Motif(CA)33
PCR ConditionAnnealing temperature: 51
Primer 1CIR413_F: TTAAAGCTCACACACACA
Primer 2CIR413_R: CAACAGTAACGAAGAACAAT
Product Length140
PolymorphismP_ CIR0413
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567337
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:5132936..5133075 +
CM018222.1chromosomeCM018222.1:4222668..4222785 +
Ghir_D08chromosomeGhir_D08:4481835..4481973 +
D08chromosomeD08:4256926..4257067 +
D08chromosomeD08:4472033..4472168 +
D08chromosomeD08:4553710..4553851 +
D08chromosomeD08:4369789..4369904 +
CM017630.1chromosomeCM017630.1:4544890..4545049 +
CM017656.1chromosomeCM017656.1:4576682..4576809 +
CM017708.1chromosomeCM017708.1:4545367..4545483 +
D08chromosomeD08:4587869..4588008 +
Chr04chromosomeCIR0413:1..161 .
Chr04:4353988..4354116 +
Chr4chromosomeCIR0413:1..161 .
Chr4:23804149..23804277 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567337AJ567337Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Deltapine-61 x Texas-701, F2 (2007)AD_chUN/A0CIR413-144View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch24_Dt.08N/A133.4CIR413View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch24_Dt.08N/A96.68CIR413View
4TM-1 x 3-79, RIL (2012)AD_ch24_Dt.08N/A2.17CIR413View
5TM-1 x 3-79, RIL (2014)AD_ch24_Dt.08N/A6.1CIR413View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A40.9CIR413View
7Handan-208 x Pima-90, F2:3 (2007)AD_ch23_Dt.09N/A128.8CIR413aView
8Handan-208 x Pima-90, F2:3 (2007)AD_ch24_Dt.08N/A82.8CIR413bView
9HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch24_Dt.08N/A15CIR413-134View
10AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A130cir0413View
11AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A223cir0413View
12AD-genome wide Reference Map (2009)AD_ch24_Dt.08N/A123cir0413View
13TM-1 x Hai-7124, BC1 (2007)AD_ch19_Dt.05N/A128.9CIR413-1200View
14TM-1 x Hai-7124, BC1 (2008)AD_ch19_Dt.05N/A127.86CIR413-1200View
15TM-1 x Hai-7124, BC1 (2012)AD_ch19_Dt.05N/A64CIR413-1200View
16TM-1 x Hai-7124, BC1 (2008)AD_ch24_Dt.08N/A120.22CIR413-50View
17TM-1 x Hai-7124, BC1 (2007)AD_ch24_Dt.08N/A39.9CIR413-50View
18TM-1 x Hai-7124, BC1 (2012)AD_ch24_Dt.08N/A46.3CIR413-50View
19TM-1 x Hai-7124, BC1 (2007)AD_ch25_Dt.06N/A98.8CIR413-420View
20TM-1 x Hai-7124, BC1 (2008)AD_ch25_Dt.06N/A56.11CIR413-420View
21TM-1 x Hai-7124, BC1 (2012)AD_ch25_Dt.06N/A54.1CIR413-420View
22TM-1 x 3-79, RIL (2012.v3)AD_ch24_Dt.08N/A6.11CIR413View
Sequence
>CIR0413 ID=CIR0413; Name=CIR0413; organism=Gossypium hirsutum; type=genetic_marker; length=140bp
TTAAAGCTCACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACATCCTTCACGCTCCACACTCTATACAC
TTAGCACCCTTGTTTTTGTCATTGTTCTTCGTTACTGTTG