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Marker Overview
Name | CIR0413 |
Alias | CIR413
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Genbank ID | AJ567337 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567337
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Source Type | genomic |
Repeat Motif | (CA)33 |
PCR Condition | Annealing temperature: 51 |
Primer 1 | CIR413_F: TTAAAGCTCACACACACA |
Primer 2 | CIR413_R: CAACAGTAACGAAGAACAAT |
Product Length | 140 |
Polymorphism | P_ CIR0413 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Deltapine-61 x Texas-701, F2 (2007) | AD_chU | N/A | 0 | CIR413-144 | View |
2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch24_Dt.08 | N/A | 133.4 | CIR413 | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch24_Dt.08 | N/A | 96.68 | CIR413 | View |
4 | TM-1 x 3-79, RIL (2012) | AD_ch24_Dt.08 | N/A | 2.17 | CIR413 | View |
5 | TM-1 x 3-79, RIL (2014) | AD_ch24_Dt.08 | N/A | 6.1 | CIR413 | View |
6 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch24_Dt.08 | N/A | 40.9 | CIR413 | View |
7 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch23_Dt.09 | N/A | 128.8 | CIR413a | View |
8 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch24_Dt.08 | N/A | 82.8 | CIR413b | View |
9 | HS-46 x MARCABUCAG8US-1-88, RIL (2009) | AD_ch24_Dt.08 | N/A | 15 | CIR413-134 | View |
10 | AD-genome wide Reference Map (2009) | AD_ch25_Dt.06 | N/A | 130 | cir0413 | View |
11 | AD-genome wide Reference Map (2009) | AD_ch19_Dt.05 | N/A | 223 | cir0413 | View |
12 | AD-genome wide Reference Map (2009) | AD_ch24_Dt.08 | N/A | 123 | cir0413 | View |
13 | TM-1 x Hai-7124, BC1 (2007) | AD_ch19_Dt.05 | N/A | 128.9 | CIR413-1200 | View |
14 | TM-1 x Hai-7124, BC1 (2008) | AD_ch19_Dt.05 | N/A | 127.86 | CIR413-1200 | View |
15 | TM-1 x Hai-7124, BC1 (2012) | AD_ch19_Dt.05 | N/A | 64 | CIR413-1200 | View |
16 | TM-1 x Hai-7124, BC1 (2008) | AD_ch24_Dt.08 | N/A | 120.22 | CIR413-50 | View |
17 | TM-1 x Hai-7124, BC1 (2007) | AD_ch24_Dt.08 | N/A | 39.9 | CIR413-50 | View |
18 | TM-1 x Hai-7124, BC1 (2012) | AD_ch24_Dt.08 | N/A | 46.3 | CIR413-50 | View |
19 | TM-1 x Hai-7124, BC1 (2007) | AD_ch25_Dt.06 | N/A | 98.8 | CIR413-420 | View |
20 | TM-1 x Hai-7124, BC1 (2008) | AD_ch25_Dt.06 | N/A | 56.11 | CIR413-420 | View |
21 | TM-1 x Hai-7124, BC1 (2012) | AD_ch25_Dt.06 | N/A | 54.1 | CIR413-420 | View |
22 | TM-1 x 3-79, RIL (2012.v3) | AD_ch24_Dt.08 | N/A | 6.11 | CIR413 | View |
Sequence
>CIR0413 ID=CIR0413; Name=CIR0413; organism=Gossypium hirsutum; type=genetic_marker; length=140bp TTAAAGCTCACACACACACACACACACACACACACACACACACACACACA CACACACACACACACACACACACATCCTTCACGCTCCACACTCTATACAC TTAGCACCCTTGTTTTTGTCATTGTTCTTCGTTACTGTTG
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