JESPR0227, JESPR0227 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	JESPR0227
Alias	JESPR227 JESPR0227=CM0061 CM0061
Genbank ID	AF351465
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	AF351465.1
Source Type	genomic
Repeat Motif	(GA)19
Primer 1	JESPR0227_F: CGAGAAGATGAGATTGGAGGAG
Primer 2	JESPR0227_R: GGTTTTCCATTCTCTTTCATTTTC
Polymorphism	P_ JESPR0227
Publication	[view all]
Comment	Primer data obtained in 2002

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	AF351465

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D06	chromosome	D06:15029891..15030003 -
CM018220.1	chromosome	CM018220.1:14005305..14005409 -
Dt_chr10	chromosome	Dt_chr10:16653657..16653769 +
D06	chromosome	D06:14228374..14228486 -
Ghir_D06	chromosome	Ghir_D06:14753122..14753232 -
D06	chromosome	D06:14322319..14322431 -
D06	chromosome	D06:14735958..14736064 -
D06	chromosome	D06:14254916..14255028 -
Dt06	chromosome	Dt06:13830775..13830879 -
scaffold955	supercontig	scaffold955:82659..82763 -
Gbar_D06	chromosome	Gbar_D06:14157386..14157488 -
D06	chromosome	D06:13930465..13930569 -
CM017628.1	chromosome	CM017628.1:14630505..14630645 -
CM017654.1	chromosome	CM017654.1:14360867..14360993 -
D06	chromosome	D06:14921254..14921366 -
Chr10	chromosome	JESPR0227:1..223 . Chr10:13798911..13799118 -
Chr10	chromosome	JESPR0227:1..223 . Chr10:8643531..8643738 +

Publications


Year	Publication
2001	Reddy O, Pepper A, Abdurakhmonov I, Saha S, Jenkins J, Brooks T, Bolek Y, El-Zik K. New dinucleotide and trinucleotide microsatellite marker resources for cotton genome research. Journal of cotton science. 2001; 5(2):103-113

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
AF351465.1	AF351465.1	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Acala-44 x Pima S-7, F2 (2004)	AD_ch25_Dt.06	N/A	90.1	JESPR227	View
2	Guazuncho-2 x VH8-4602, RIL (2009)	AD_ch25_Dt.06	N/A	31.85	JESPR227	View
3	Handan-208 x Pima-90, F2:3 (2007)	AD_ch25_Dt.06	N/A	240.1	JESPR227	View
4	Xinluzao-1 x Hai-7124, F2 (2008)	AD_ch25_Dt.06	N/A	91.3	JESPR227	View
5	Emian-22 x 3-79, BC1 (2011)	AD_ch25_Dt.06	N/A	74.77	JESPR227	View
6	Guazuncho-2 x VH8-4602, BC1 (2005)	AD_ch25_Dt.06	N/A	78.9	JESPR227	View
7	Guazuncho-2 x VH8-4602, consensus (2009)	AD_ch25_Dt.06	N/A	65.3	JESPR227	View
8	0-153 x sGK9708, RIL (2015)	AD_ch25_Dt.06	N/A	52.67	JESPR227	View
9	0-153 x sGK9708, RIL (2016)	AD_ch25_Dt.06	N/A	127.8	JESPR227	View
10	CCRI-36 x Hai-7124, F2 (2007)	AD_ch25_Dt.06	N/A	74.3	JESP227	View
11	TM-1 x 3-79, RIL (2012)	AD_ch02_At.02	N/A	67.27	JESPR227a	View
12	TM-1 x 3-79, RIL (2014)	AD_ch02_At.02	N/A	68.4	JESPR227a	View
13	Monsanto SSR Bin Map, (2009)	AD_ch02_At.02	N/A	61	JESPR227a	View
14	TM-1 x 3-79, RIL (2012)	AD_ch25_Dt.06	N/A	67.2	JESPR227b	View
15	TM-1 x 3-79, RIL (2014)	AD_ch25_Dt.06	N/A	63.5	JESPR227b	View
16	Monsanto SSR Bin Map, (2009)	AD_ch25_Dt.06	N/A	61	JESPR227b	View
17	AD-genome wide Reference Map (2009)	AD_ch25_Dt.06	N/A	77	jespr0227	View
18	TM-1 x Hai-7124, BC1 (2007)	AD_ch25_Dt.06	N/A	83.7	JESPR227-125	View
19	TM-1 x Hai-7124, BC1 (2008)	AD_ch25_Dt.06	N/A	57.59	JESPR227-125	View
20	TM-1 x Hai-7124, BC1 (2005.v0)	AD_ch25_Dt.06	N/A	175.2	JESPR227-125	View
21	TM-1 x Hai-7124, BC1 (2012)	AD_ch25_Dt.06	N/A	67.8	JESPR227-125	View
22	TM-1 x 3-79, RIL (2012.v3)	AD_ch02_At.02	N/A	68.39	JESPR227a	View
23	TM-1 x 3-79, RIL (2012.v3)	AD_ch25_Dt.06	N/A	63.5	JESPR227b	View
24	PD 94042 x (AD)4-08, F2 (2016)	AD_ch25_Dt.06	N/A	87.1	JESPR227	View

Sequence

>JESPR0227 ID=JESPR0227; Name=JESPR0227; organism=Gossypium hirsutum; type=genetic_marker; length=107bp
CGAGAAGATGAGATTGGAGGAGTAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGCAACAACAAAAACCTTTGGAGAAAATGAAAGAGAATG
GAAAACC

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JESPR0227, JESPR0227 (genetic_marker) Gossypium hirsutum