CIR0183, CIR0183 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	CIR0183
Alias	CIR183
Genbank ID	AJ567130
Type	SSR
Species	Gossypium hirsutum
Germplasm	Guazuncho-2
Source Sequence	AJ567130
Source Type	genomic
Repeat Motif	(AC)10(AT)6
PCR Condition	Annealing temperature: 55
Primer 1	CIR183_F: CCAGATTAGAACCTATGAAAC
Primer 2	CIR183_R: TAGCCCATTTCTTACCAC
Product Length	163
Polymorphism	P_ CIR0183
Publication	[view all]
Comment	Primer data obtained in 2005

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	AJ567130

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D04	chromosome	D04:50297498..50297659 -
A04	chromosome	A04:76128601..76128764 -
CM018205.1	chromosome	CM018205.1:74681796..74681959 -
Chr04_CRI-A2_v1.0.a1	chromosome	Chr04_CRI-A2_v1.0.a1:6372991..6373152 +
Dt_chr12	chromosome	Dt_chr12:7274809..7274970 +
D04	chromosome	D04:45361645..45361806 -
A04	chromosome	A04:57275839..57276002 -
Ghir_D04	chromosome	Ghir_D04:50092066..50092227 -
Ghir_A04	chromosome	Ghir_A04:78264600..78264763 -
D04	chromosome	D04:51041094..51041255 -
A04	chromosome	A04:81123084..81123247 -
D04	chromosome	D04:50003798..50003959 -
A04	chromosome	A04:78414812..78414971 -
D04	chromosome	D04:47980340..47980501 -
A04	chromosome	A04:74035073..74035234 -
scaffold452	supercontig	scaffold452:364602..364765 +
Gbar_A04	chromosome	Gbar_A04:75033806..75033969 -
D04	chromosome	D04:51363479..51363648 -
A04	chromosome	A04:75567370..75567533 -
CM017626.1	chromosome	CM017626.1:48484738..48484897 -
CM017652.1	chromosome	CM017652.1:51355390..51355549 -
CM017639.1	chromosome	CM017639.1:85509255..85509420 -
CM017691.1	chromosome	CM017691.1:75427307..75427470 -
D04	chromosome	D04:51889778..51889939 -
A04	chromosome	A04:82045368..82045531 -
Chr04	chromosome	Chr04:101965203..101965400 -
Chr04	chromosome	Chr04:103831312..103831473 -
B_02	chromosome	B_02:6962243..6962422 +
Chr12	chromosome	Chr12:18043460..18043625 -
F04	chromosome	F04:85174339..85174480 -
Chr04	chromosome	Chr04:166737888..166738053 -

Publications


Year	Publication
2004	Nguyen TB, Giband M, Brottier P, Risterucci AM, Lacape JM. Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theoretical and applied genetics. 2004 Jun; 109(1):167-75

Germplasm


Stock Name	Type
Guazuncho-2	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
AJ567130	AJ567130	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	7235 x TM-1, RIL (2007)	AD_ch12_At.12	N/A	66.5	CIR183	View
2	CCRI-36 x Hai-7124, F2 (2007)	AD_ch22_Dt.04	N/A	53.9	CIR183	View
3	Guazuncho-2 x VH8-4602, BC1 (2005)	AD_ch22_Dt.04	N/A	25.7	CIR183	View
4	Guazuncho-2 x VH8-4602, consensus (2009)	AD_ch22_Dt.04	N/A	28.53	CIR183	View
5	Yumian-1 x T586, RIL (2006)	AD_ch22_Dt.04	N/A	0	CIR183	View
6	(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)	AD_ch22_Dt.04	N/A	0	CIR183	View
7	Yumian-1 x T586, RIL (2015)	AD_ch22_Dt.04	N/A	49.4	CIR183	View
8	CCRI-35 x Yumian-1, RIL (2015)	AD_ch04_At.04	N/A	66.5	CIR183	View
9	Handan-208 x Pima-90, F2:3 (2007)	AD_ch22_Dt.04	N/A	96.7	CIR183b	View
10	Handan-208 x Pima-90, F2:3 (2007)	AD_ch22_Dt.04	N/A	162.9	CIR183a	View
11	AD-genome wide Reference Map (2009)	AD_ch22_Dt.04	N/A	22	cir0183	View
12	Yumian-1 x T586, RIL (2009)	AD_ch22_Dt.04	N/A	96.2	CIR183/190y(C22)	View
13	CCRI-35 x Yumian-1, RIL (2017)	AD_ch04_At.04	N/A	60.14	CIR183	View

Sequence

>CIR0183 ID=CIR0183; Name=CIR0183; organism=Gossypium hirsutum; type=genetic_marker; length=163bp
CCAGATTAGAACCTATGAAACATAAAACTCTATACATACATAGGTACACA
CACACACACACACACATATATATATATGAAACATGGTCAATTAAAGCCAA
CAAAACATCATAAACTTTGTCTTCAATAACCAGAAAGTGCTGTGGGTGGT
AAGAAATGGGCTA

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CIR0183, CIR0183 (genetic_marker) Gossypium hirsutum