BNL1394, BNL1394 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL1394
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1394_orig
Source Typegenomic
Repeat Motif(AG)12
PCR ConditionAnnealing temperature: 55
Primer 1BNL1394_F: AACAATCGCACCCCTAACAG
Primer 2BNL1394_R: TTTCAACTAGTCAAGTGTTCTTTCA
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:33442176..33442319 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:52893271..52893424 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr13chromosomeDt_chr13:35279660..35279803 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3511_A13supercontigscaffold3511_A13:90530..90673 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:34139229..34139372 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:36614698..36614841 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:35376880..35377023 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:35086422..35086565 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2217supercontigscaffold2217:142030..142277 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2217supercontigscaffold2217:140516..140763 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
A13chromosomeA13:36446933..36447178 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:36368715..36368960 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
A13chromosomeA13:36579964..36580107 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:34939592..34939835 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:51974390..51974545 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1394_origBNL1394_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch13_At.13N/A86BNL1394View
2Emian-22 x 3-79, BC1 (2011)AD_ch13_At.13N/A120.85BNL1394View
3Handan-208 x Pima-90, F2:3 (2007)AD_ch22_Dt.04N/A197.3BNL1394View
4Xinluzao-1 x Hai-7124, F2 (2008)AD_ch13_At.13N/A0BNL1394View
5AD-genome wide Reference Map (2009)AD_ch13_At.13N/A143BNL1394View
6TM-1 x Hai-7124, BC1 (2008)AD_ch13_At.13N/A59.51BNL1394-150View
7TM-1 x Hai-7124, BC1 (2012)AD_ch13_At.13N/A77.2BNL1394-150View
Sequence
>BNL1394 ID=BNL1394; Name=BNL1394; organism=Gossypium hirsutum; type=genetic_marker; length=144bp
AACAATCGCACCCCTAACAGTAATCGGCAGAGAAAAGAAGTTGTTAGATG
AATAATTATAACACACACACACACATAGAGAGAGAGAGAGAGAGAGAGAG
AAAGAACTATACAGATTGATGAAAGAACACTTGACTAGTTGAAA