BNL2611, BNL2611 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2611
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2611_orig
Source Typegenomic
Repeat Motif(AG)14
PCR ConditionAnnealing temperature: 55
Primer 1BNL2611_F: TAAAATAGTTGAGAGAATTGAGATAATAGG
Primer 2BNL2611_R: TCCCAATGGTAAGTTCCCAA
PolymorphismP_ BNL2611
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:34021815..34021959 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:32263778..32263926 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_09chromosomeD10_09:17224898..17225035 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr6chromosomeDt_chr6:17071225..17071369 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:32274949..32275093 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:34358545..34358689 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:34173317..34173461 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:33955179..33955323 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:32190817..32190961 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold5319supercontigscaffold5319:191267..191405 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10824supercontigscaffold10824:455523..455671 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:32865204..32865352 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:55702432..55702570 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:35566466..35566630 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:33125541..33125711 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:34425424..34425602 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:33727465..33727647 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:35511556..35511700 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:32431763..32431902 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:48561568..48561896 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr_06chromosomeChr_06:22403138..22403275 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:34092240..34092383 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:24399925..24400065 -Gossypium aridum (D4) genome ISU_v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2611_origBNL2611_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch09_At.09N/A114.8BNL2611bView
2Handan-208 x Pima-90, F2:3 (2007)AD_ch23_Dt.09N/A58.5BNL2611bView
3SG 747 x Giza 75, BIL (2013)AD_ch09_At.09N/A82.2BNL2611bView
4CCRI-36 x Hai-7124, F2 (2007)AD_ch23_Dt.09N/A113.2BNL2611aView
5SG 747 x Giza 75, BIL (2013)AD_ch23_Dt.09N/A113.2BNL2611aView
6AD-genome wide Reference Map (2009)AD_ch23_Dt.09N/A93bnl2611View
7AD-genome wide Reference Map (2009)AD_ch09_At.09N/A119bnl2611View
8Xinluzao-1 x Hai-7124, F2 (2008)AD_chUN/A22.2bnl2611View
9CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch22_Dt.04N/A76.3bnl2611View
10CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch22_Dt.04N/A77.6BNL2611View
Sequence
>BNL2611 ID=BNL2611; Name=BNL2611; organism=Gossypium hirsutum; type=genetic_marker; length=145bp
TAAAATAGTTGAGAGAATTGAGATAATAGGATTGAGTGGAAAAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAATACGTAGGGTATATATTGAGAAAAAGTA
GCCGTTTCAAAACAAAAATTGACCTTTGGGAACTTACCATTGGGA