Handan-208 x Pima-90, F2:3 (2007)

Map Overview


Name	Handan-208 x Pima-90, F2:3 (2007)
Species	Gossypium hirsutum x barbadense
Software	MapMaker v3.0b
Population type	F2:3
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1028
Number of QTL	43
Number of linkage groups	26
Publication	[view all]
Contact	Zhang, Xian-Long

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Publication


Year	Publications
2005	Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Linkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. Plant breeding. 2005; 124(2):180-187
2005	He D, Lin Z, Zhang X, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. Euphytica : international journal of plant breeding. 2005; 144(1-2):141-149
2007	He D, Lin Z, Zhang X, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica. 2007; 153(1-2):181-197

Map Loci

This map contains 1,028 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Handan-208 x Pima-90, F2:3 (2007).chr02	BNL3971	BNL3971	marker_locus	2.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr02	BNL3590	BNL3590	marker_locus	15 cM
Handan-208 x Pima-90, F2:3 (2007).chr02	BNL1434	BNL1434	marker_locus	16.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	BNL2264	BNL2264a	marker_locus	0 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m11e6-540a	m11e6-540a	marker_locus	16.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m9e5-800	m9e5-800	marker_locus	20.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	CIR0068	CIR068a	marker_locus	23.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m14e10-600b	m14e10-600b	marker_locus	23.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	BNL1580	BNL1580a	marker_locus	30.5 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	BNL3989	BNL3989	marker_locus	42.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	JESPR0023	JESPR23	marker_locus	57.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	CIR0212	CIR212a	marker_locus	77.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m1e1-530	m1e1-530	marker_locus	103.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m4e3-800	m4e3-800	marker_locus	110.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m5e5-520	m5e5-520	marker_locus	116.4 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m5e5-580	m5e5-580	marker_locus	118.8 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m9e7-210	m9e7-210	marker_locus	120.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m5e5-480	m5e5-480	marker_locus	122.9 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	JESPR0165	JESPR165	marker_locus	125.3 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	m13e9-800	m13e9-800	marker_locus	128.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	CIR0181	CIR181a	marker_locus	128.1 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	BNL4012	BNL4012	marker_locus	129 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	BNL3145	BNL3145a	marker_locus	129 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	BNL3523	BNL3523a	marker_locus	129.7 cM
Handan-208 x Pima-90, F2:3 (2007).chr03	BNL1059	BNL1059b*	marker_locus	131.8 cM

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Map QTL

This map contains 43 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Handan-208 x Pima-90, F2:3 (2007).chr14	qLY.HP-ch14	QTL	116.9 cM	120.4 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.1	QTL	99.2 cM	101.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.2	QTL	101.7 cM	106.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr14	qMIC.HP-ch14.3	QTL	106.7 cM	109 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr15	qLY.HP-ch15	QTL	21.6 cM	28.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr17	qLI.HP-ch17	QTL	216.6 cM	220.9 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr19/lgD08	qLI.HP-ch19	QTL	133.8 cM	135.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr21/lgD02	qSCY.HP-ch21	QTL	167.5 cM	179.1 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr22	qMIC.HP-ch22	QTL	0 cM	18.3 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qFS.HP-ch23	QTL	99.5 cM	101.8 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qLY.HP-ch23	QTL	71.3 cM	74.5 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr23	qSI.HP-ch23	QTL	32.4 cM	207 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr24/lgD03	qMIC.HP-ch24	QTL	80.9 cM	89.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qLY.HP-ch25	QTL	173.2 cM	175.7 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr25	qSI.HP-ch25	QTL	261.3 cM	264.6 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qLY.HP-ch26	QTL	71.7 cM	74.2 cM	-
Handan-208 x Pima-90, F2:3 (2007).chr26	qSI.HP-ch26	QTL	71.7 cM	74.2 cM	-

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Handan-208 x Pima-90, F2:3 (2007)