CIR0181, CIR0181 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0181
AliasCIR181
Genbank IDAJ567128
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567128
Source Typegenomic
Repeat Motif(TG)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR181_F: AAACCTAGACAGCATGTAAA
Primer 2CIR181_R: TCTTGAAGGGAAACGA
Product Length150
PolymorphismP_ CIR0181
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:35641463..35641613 +
D02chromosomeD02:21173914..21174061 -
CM018216.1chromosomeCM018216.1:32196515..32196657 -
CM018204.1chromosomeCM018204.1:48121041..48121189 -
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:77519299..77519451 +
D10_03chromosomeD10_03:34353204..34353356 +
CM016616.1chromosomeCM016616.1:81797457..81797622 -
Dt_chr5chromosomeDt_chr5:310629..310779 +
At_chr12chromosomeAt_chr12:74687697..74687845 +
scaffold87537supercontigscaffold87537:373..523 +
scaffold626_A03supercontigscaffold626_A03:740475..740623 +
scaffold3820_D02supercontigscaffold3820_D02:311894..312044 -
Ghir_D02chromosomeGhir_D02:33578031..33578181 -
Ghir_A03chromosomeGhir_A03:51762493..51762641 -
D02chromosomeD02:34338994..34339144 -
A03chromosomeA03:51661848..51661996 -
D02chromosomeD02:35745206..35745356 -
A03chromosomeA03:49870827..49870975 -
D02chromosomeD02:32806348..32806498 -
A03chromosomeA03:46344208..46344356 -
At03chromosomeAt03:45539261..45539994 -
scaffold9092supercontigscaffold9092:17446..17588 +
scaffold1245supercontigscaffold1245:902223..902956 -
Gbar_D02chromosomeGbar_D02:32757302..32757444 -
Gbar_A03chromosomeGbar_A03:47757798..47757943 -
D02chromosomeD02:33840740..33840882 -
A03chromosomeA03:49204064..49204212 -
CM017624.1chromosomeCM017624.1:34766004..34766156 -
CM017612.1chromosomeCM017612.1:49183274..49183422 -
CM017650.1chromosomeCM017650.1:35105952..35106108 -
CM017638.1chromosomeCM017638.1:51884696..51884846 -
CM017702.1chromosomeCM017702.1:33434897..33435039 -
CM017690.1chromosomeCM017690.1:49020454..49020605 -
D02chromosomeD02:35817504..35817654 -
A03chromosomeA03:52182614..52182761 -
Chr03chromosomeChr03:59664772..59664917 +
Chr03chromosomeChr03:29664957..29665105 +
Chr05chromosomeChr05:31615929..31616075 -
chr05chromosomechr05:23362539..23362703 +
Chr_05chromosomeChr_05:20835052..20835204 +
Chr05chromosomeChr05:32812547..32812695 -
Chr05chromosomeChr05:17845609..17845756 +
Chr05chromosomeChr05:22480867..22481129 +
Chr03chromosomeChr03:139958635..139958787 -
Chr05chromosomeCIR0181:1..221 .
Chr05:29960072..29960291 +
Chr5chromosomeCIR0181:1..221 .
Chr5:34245027..34245246 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567128AJ567128Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch14_Dt.02N/A68.7CIR181View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch14_Dt.02N/A55.66CIR181View
3Emian-22 x 3-79, BC1 (2011)AD_ch14_Dt.02N/A41.99CIR181View
4Handan-208 x Pima-90, F2:3 (2007)AD_ch03_At.03N/A128.1CIR181aView
5Handan-208 x Pima-90, F2:3 (2007)AD_ch14_Dt.02N/A75.7CIR181bView
6AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A111cir0181View
7TM-1 x Hai-7124, BC1 (2008)AD_ch14_Dt.02N/A68.34CIR181-170View
8TM-1 x Hai-7124, BC1 (2007)AD_ch14_Dt.02N/A66.5CIR181-170View
9TM-1 x Hai-7124, BC1 (2012)AD_ch14_Dt.02N/A47.1CIR181-170View
Sequence
>CIR0181 ID=CIR0181; Name=CIR0181; organism=Gossypium hirsutum; type=genetic_marker; length=150bp
AAACCTAGACAGCATGTAAAACAATTCAATATTCAATTTTGTTTCTCAAG
ATGAACAGTATTTTAAAATCTAGAACCTAAAGGCAATATTACAAGTGTCT
GTGTGTGTGTGTGCGTGGGTTAACGATGATAGACTCGTTTCCCTTCAAGA