BNL3971, BNL3971 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3971
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3971_orig
Source Typegenomic
Repeat Motif(TC)15
PCR ConditionAnnealing temperature: 55
Primer 1BNL3971_F: CACATATTTTTGCCTCACGC
Primer 2BNL3971_R: TGTGGACCCAAAAAGGAAGA
PolymorphismP_ BNL3971
CommentPrimer data obtained in 2000
Germplasm
Stock NameType
Deltapine 90obsolete_cultivar
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
BNL3971_FBNL3971_FGossypium hirsutumprimer
BNL3971_RBNL3971_RGossypium hirsutumprimer


This genetic_marker is contained in the following chromosome_arm feature(s):

Feature NameUnique NameSpeciesType
2 Long2 LongGossypium hirsutumchromosome_arm


This genetic_marker is located in the following QTL feature(s):

Feature NameUnique NameSpeciesType
short fiber contentqSFC.PA-F2_ch02-1.pop04-06Gossypium hirsutum x mustelinumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3971BNL3971Gossypium hirsutummarker_locus
BNL3971bBNL3971bGossypium hirsutummarker_locus
BNL3971-140BNL3971-140Gossypium hirsutummarker_locus
BNL3971BNL3971-60.192Gossypium hirsutummarker_locus
BNL3971BNL3971-4.7Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3971_origBNL3971_origGossypium hirsutumsequence_feature


Sequence
>BNL3971 ID=BNL3971|Name=BNL3971|organism=Gossypium hirsutum|type=genetic_marker|length=144bp
CACATATTTTTGCCTCACGCTCTCCCTCTTATGTCAGTTTCTCCCCTTCT
CTTTCAAGGTTTCAGATTTTGATTTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTTTCTCCTTTGATTTTCTTTTCTTCCTTTTTGGGTCCACA
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
13-79 x NM24016, RIL (2008)3-79 x NM24016, RIL (2008).3N-RIL_chr02N/AAD_chr.0229.1BNL3971View
2CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr02N/AAD_chr.0253.1BNL3971View
3Guazuncho-2 x VH8-4602, BC1 (2005)Guazuncho-2 x VH8-4602, BC1 (2005).GV-BC1_chr02N/AAD_chr.0284.3BNL3971View
4Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c02N/AAD_chr.0245.54BNL3971View
5Guazuncho-2 x VH8-4602, RIL (2009)Guazuncho-2 x VH8-4602, RIL (2009).GV-RIL_ch02N/AAD_chr.0236.49BNL3971View
6Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr02N/AAD_chr.022.5BNL3971View
7Jiang-Ling-Zhong-Mian x Zhe-Jiang-Xiao-Shan-Lu-Shu, F2 (2008)Jiang-Ling-Zhong-Mian x Zhe-Jiang-Xiao-Shan-Lu-Shu, F2 (2008).JZ-F2_A02N/AA_chr.0241.2BNL3971View
8Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr02N/AAD_chr.0270BNL3971View
9Palmeri x K-101, F2 (2007)Palmeri x K-101, F2 (2007).PK-F2_chr02N/AAD_chr.0288.7BNL3971View
10AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr17N/AAD_chr.1772BNL3971View
11TM-1 x 3-79, RIL (2006)TM-1 x 3-79, RIL (2006).T3-RIL_chr.02N/AAD_chr.0248.3BNL3971View
12TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c02N/AAD_chr.0259.5BNL3971View
13Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg6/chr02N/AAD_chr.02117.3BNL3971View
14Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr02N/AAD_chr.0278.32BNL3971View
15AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr02N/AAD_chr.0296BNL3971View
16TM-1 x 3-79, RIL (2014)T3-RIL.14_chr02N/AAD_chr.0260.2BNL3971View
17CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr02N/AAt.0296.2BNL3971View
18SG 747 x Giza 75, BIL (2013)SG-BIL_chr02N/AAD_chr.0256.2BNL3971View
19Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr17N/AAD_chr.17141.1BNL3971bView
20TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr02N/AAD_chr.0259.6BNL3971-140View
21TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr02/A2N/AAD_chr.0248.12BNL3971-140View
22Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_chr02N/AAD_chr.0283BNL3971-140View
23TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.02N/AAD_chr.0260.19BNL3971View
24PD 94042 x (AD)4-08, F2 (2016)PA-F2_chr02-1N/AAt.024.7BNL3971View
Image
File NameLegend
45_FISH_GEN-178-1117_fig2.jpgBAC clones and their corresponding genetic markers of the 22 probes according to FISH signal patterns in Figure 1. [Image from Wang et al., 2008, GEN-178-1117]
46_FISH_GEN-178-1117_fig3.jpgTwo BAC translocations involving two chromosome pairs of At2 and A3 and At4 and A5 between G. arboreum and A-subgenome of G. hirsutum. [Image from Wang et al., 2008, GEN-178-1117]
48_FISH_TAG-115-675.jpgTwenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675]