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Marker Overview
Name | BNL3971 |
Genbank ID | N/A |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Deltapine 90 |
Source Sequence | BNL3971_orig
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Source Type | genomic |
Repeat Motif | (TC)15 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | BNL3971_F: CACATATTTTTGCCTCACGC |
Primer 2 | BNL3971_R: TGTGGACCCAAAAAGGAAGA |
Polymorphism | P_ BNL3971 |
Comment | Primer data obtained in 2000 |
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
File Name | Legend |
45_FISH_GEN-178-1117_fig2.jpg | BAC clones and their corresponding genetic markers of the 22 probes according to FISH signal patterns in Figure 1. [Image from Wang et al., 2008, GEN-178-1117] |
46_FISH_GEN-178-1117_fig3.jpg | Two BAC translocations involving two chromosome pairs of At2 and A3 and At4 and A5 between G. arboreum and A-subgenome of G. hirsutum. [Image from Wang et al., 2008, GEN-178-1117] |
48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | 3-79 x NM24016, RIL (2008) | AD_ch02_At.02 | N/A | 29.1 | BNL3971 | View |
2 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch02_At.02 | N/A | 53.1 | BNL3971 | View |
3 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch02_At.02 | N/A | 84.3 | BNL3971 | View |
4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch02_At.02 | N/A | 45.54 | BNL3971 | View |
5 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch02_At.02 | N/A | 36.49 | BNL3971 | View |
6 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch02_At.02 | N/A | 2.5 | BNL3971 | View |
7 | JLZM x ZJXSLS, F2 (2008) | A_JZ_A02 | N/A | 41.2 | BNL3971 | View |
8 | Palmeri x K-101, F2 (2007) | AD_ch02_At.02 | N/A | 88.7 | BNL3971 | View |
9 | AD-genome wide Reference Map (2009) | AD_ch17_Dt.03 | N/A | 72 | BNL3971 | View |
10 | TM-1 x 3-79, RIL (2006) | AD_ch02_At.02 | N/A | 48.3 | BNL3971 | View |
11 | TM-1 x 3-79, RIL (2012) | AD_ch02_At.02 | N/A | 59.5 | BNL3971 | View |
12 | Xinluzao-1 x Hai-7124, F2 (2008) | AD_ch02_At.02 | N/A | 117.3 | BNL3971 | View |
13 | Emian-22 x 3-79, BC1 (2011) | AD_ch02_At.02 | N/A | 78.32 | BNL3971 | View |
14 | AD-genome wide Reference Map (2009) | AD_ch02_At.02 | N/A | 96 | BNL3971 | View |
15 | TM-1 x 3-79, RIL (2014) | AD_ch02_At.02 | N/A | 60.2 | BNL3971 | View |
16 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch02_At.02 | N/A | 96.2 | BNL3971 | View |
17 | SG 747 x Giza 75, BIL (2013) | AD_ch02_At.02 | N/A | 56.2 | BNL3971 | View |
18 | Monsanto SSR Bin Map, (2009) | AD_ch02_At.02 | N/A | 61 | BNL3971 | View |
19 | LMY22 x LY343, RIL (2016) | chr.2 | N/A | 28.3 | BNL3971 | View |
20 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch17_Dt.03 | N/A | 141.1 | BNL3971b | View |
21 | TM-1 x Hai-7124, BC1 (2007) | AD_ch02_At.02 | N/A | 59.6 | BNL3971-140 | View |
22 | TM-1 x Hai-7124, BC1 (2008) | AD_ch02_At.02 | N/A | 48.12 | BNL3971-140 | View |
23 | Vsg x (TM-1 x Hai-7124), DH (2005) | AD_ch02_At.02 | N/A | 83 | BNL3971-140 | View |
24 | TM-1 x Hai-7124, BC1 (2012) | AD_ch02_At.02 | N/A | 45.3 | BNL3971-140 | View |
25 | TM-1 x 3-79, RIL (2012.v3) | AD_ch02_At.02 | N/A | 60.19 | BNL3971 | View |
26 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch02_At.02 | N/A | 4.7 | BNL3971 | View |
Sequence
>BNL3971 ID=BNL3971; Name=BNL3971; organism=Gossypium hirsutum; type=genetic_marker; length=144bp CACATATTTTTGCCTCACGCTCTCCCTCTTATGTCAGTTTCTCCCCTTCT CTTTCAAGGTTTCAGATTTTGATTTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTTTCTCCTTTGATTTTCTTTTCTTCCTTTTTGGGTCCACA
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